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PLCD4 phospholipase C delta 4 [ Bubalus bubalis (water buffalo) ]

Gene ID: 102394200, updated on 10-Mar-2024

Summary

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Gene symbol
PLCD4
Gene description
phospholipase C delta 4
See related
EnsemblRapid:ENSBALG00030021982
Gene type
protein coding
RefSeq status
MODEL
Organism
Bubalus bubalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bubalus
Orthologs
human mouse all
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Genomic context

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See PLCD4 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
17
Annotation release Status Assembly Chr Location
103 current NDDB_SH_1 (GCF_019923935.1) 2 NC_059158.1 (158872111..158899082)
102 previous assembly NDDB_DH_1 (GCF_019923925.1) 2 NC_058344.1 (157836254..157863223)

Chromosome 2 - NC_059158.1Genomic Context describing neighboring genes Neighboring gene villin 1 Neighboring gene ubiquitin specific peptidase 37 Neighboring gene CCR4-NOT transcription complex subunit 9 Neighboring gene zinc finger protein 142 Neighboring gene mitochondrial chaperone BCS1 Neighboring gene ring finger protein 25

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phosphatidylinositol phospholipase C activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intracellular signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lipid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase delta-4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bubalus bubalis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NDDB_SH_1 Primary Assembly

Genomic

  1. NC_059158.1 Reference NDDB_SH_1 Primary Assembly

    Range
    158872111..158899082
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044937801.1 → XP_044793736.1  1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase delta-4 isoform X6

    Conserved Domains (4) summary
    cd15898
    Location:189 → 218
    EFh_PI-PLC; EF-hand motif [structural motif]
    cl28895
    Location:189 → 328
    EFh_PI-PLC; EF-hand motif found in eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) isozymes
    cl14615
    Location:340 → 622
    PI-PLCc_GDPD_SF; Catalytic domain of phosphoinositide-specific phospholipase C-like phosphodiesterases superfamily
    cl17171
    Location:96 → 184
    PH-like; Pleckstrin homology-like domain

  2. XM_044937798.1 → XP_044793733.1  1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase delta-4 isoform X3

    Conserved Domains (4) summary
    cd15898
    Location:189 → 218
    EFh_PI-PLC; EF-hand motif [structural motif]
    cl28895
    Location:189 → 328
    EFh_PI-PLC; EF-hand motif found in eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) isozymes
    cl14615
    Location:340 → 644
    PI-PLCc_GDPD_SF; Catalytic domain of phosphoinositide-specific phospholipase C-like phosphodiesterases superfamily
    cl17171
    Location:96 → 184
    PH-like; Pleckstrin homology-like domain

  3. XM_044937799.1 → XP_044793734.1  1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase delta-4 isoform X4

  4. XM_044937800.1 → XP_044793735.1  1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase delta-4 isoform X5

  5. XM_044937796.1 → XP_044793731.1  1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase delta-4 isoform X1

  6. XM_044937797.1 → XP_044793732.1  1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase delta-4 isoform X2

    Related
    ENSBALP00030041743.1, ENSBALT00030061747.1
    Conserved Domains (4) summary
    PLN02952
    Location:207 → 746
    PLN02952; phosphoinositide phospholipase C
    cd13363
    Location:18 → 133
    PH_PLC_delta; Phospholipase C-delta (PLC-delta) pleckstrin homology (PH) domain
    pfam14788
    Location:153 → 202
    EF-hand_10; EF hand
    cl14615
    Location:289 → 593
    PI-PLCc_GDPD_SF; Catalytic domain of phosphoinositide-specific phospholipase C-like phosphodiesterases superfamily
Nucleotide Protein
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