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OGDHL oxoglutarate dehydrogenase L [ Bubalus bubalis (water buffalo) ]

Gene ID: 102394180, updated on 10-Mar-2024

Summary

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Gene symbol
OGDHL
Gene description
oxoglutarate dehydrogenase L
See related
EnsemblRapid:ENSBALG00030022911
Gene type
protein coding
RefSeq status
MODEL
Organism
Bubalus bubalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bubalus
Orthologs
human mouse all
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Genomic context

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See OGDHL in Genome Data Viewer
Location:
chromosome: 4
Exon count:
24
Annotation release Status Assembly Chr Location
103 current NDDB_SH_1 (GCF_019923935.1) 4 NC_059160.1 (162963728..162996492, complement)
102 previous assembly NDDB_DH_1 (GCF_019923925.1) 4 NC_058346.1 (161349786..161382538, complement)

Chromosome 4 - NC_059160.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC123333469 Neighboring gene choline O-acetyltransferase Neighboring gene chromosome 4 C10orf53 homolog Neighboring gene uncharacterized LOC123465732 Neighboring gene uncharacterized LOC123333470 Neighboring gene poly(ADP-ribose) glycohydrolase Neighboring gene mitochondrial import inner membrane translocase subunit Tim23 Neighboring gene small nucleolar RNA SNORA74

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De Novo Transcriptome Assembly of the Chinese Swamp Buffalo by RNA Sequencing and SSR Marker Discovery. Deng T, et al. PLoS One, 2016. PMID 26766209, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables oxoglutarate dehydrogenase (succinyl-transferring) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables thiamine pyrophosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in tricarboxylic acid cycle IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of oxoglutarate dehydrogenase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
2-oxoglutarate dehydrogenase-like, mitochondrial
Names
oxoglutarate dehydrogenase like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bubalus bubalis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NDDB_SH_1 Primary Assembly

Genomic

  1. NC_059160.1 Reference NDDB_SH_1 Primary Assembly

    Range
    162963728..162996492 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044942426.2 → XP_044798361.2  2-oxoglutarate dehydrogenase-like, mitochondrial isoform X3

    Related
    ENSBALP00030044021.1, ENSBALT00030064885.1

  2. XM_044942424.2 → XP_044798359.2  2-oxoglutarate dehydrogenase-like, mitochondrial isoform X1

    Related
    ENSBALP00030043940.1, ENSBALT00030064783.1

  3. XM_006065676.4 → XP_006065738.4  2-oxoglutarate dehydrogenase-like, mitochondrial isoform X2

    Related
    ENSBALP00030043993.1, ENSBALT00030064850.1

  4. XM_044942427.2 → XP_044798362.1  2-oxoglutarate dehydrogenase-like, mitochondrial isoform X4

    Conserved Domains (1) summary
    PRK09404
    Location:1 → 792
    sucA; 2-oxoglutarate dehydrogenase E1 component; Reviewed

  5. XM_044942425.2 → XP_044798360.2  2-oxoglutarate dehydrogenase-like, mitochondrial isoform X2

    Related
    ENSBALP00030043746.1, ENSBALT00030064537.1
Nucleotide Protein
Heading Accession and Version

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