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SNCA synuclein alpha [ Bubalus bubalis (water buffalo) ]

Gene ID: 102393969, updated on 10-Mar-2024

Summary

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Gene symbol
SNCA
Gene description
synuclein alpha
See related
EnsemblRapid:ENSBALG00030036093
Gene type
protein coding
RefSeq status
MODEL
Organism
Bubalus bubalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bubalus
Orthologs
human mouse all
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Genomic context

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See SNCA in Genome Data Viewer
Location:
chromosome: 7
Exon count:
17
Annotation release Status Assembly Chr Location
103 current NDDB_SH_1 (GCF_019923935.1) 7 NC_059163.1 (109908990..110058372)
102 previous assembly NDDB_DH_1 (GCF_019923925.1) 7 NC_058349.1 (110161617..110311124)

Chromosome 7 - NC_059163.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC123334574 Neighboring gene multimerin 1 Neighboring gene uncharacterized LOC123334536 Neighboring gene GPRIN family member 3 Neighboring gene uncharacterized LOC123334538

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cuprous ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chemical synaptic transmission IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of dopamine secretion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in synapse organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in synaptic vesicle endocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in axon terminus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in neuronal cell body IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-synuclein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bubalus bubalis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NDDB_SH_1 Primary Assembly

Genomic

  1. NC_059163.1 Reference NDDB_SH_1 Primary Assembly

    Range
    109908990..110058372
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044946234.2 → XP_044802169.1  alpha-synuclein isoform X1

  2. XM_044946231.2 → XP_044802166.1  alpha-synuclein isoform X1

  3. XM_006066279.3 → XP_006066341.1  alpha-synuclein isoform X3

    See identical proteins and their annotated locations for XP_006066341.1

    Conserved Domains (1) summary
    pfam01387
    Location:1 → 131
    Synuclein

  4. XM_044946237.2 → XP_044802172.1  alpha-synuclein isoform X2

    Related
    ENSBALP00030066631.1, ENSBALT00030099879.1

  5. XM_044946239.2 → XP_044802174.1  alpha-synuclein isoform X5

  6. XM_044946241.2 → XP_044802176.1  alpha-synuclein isoform X7

  7. XM_044946240.2 → XP_044802175.1  alpha-synuclein isoform X6

  8. XM_044946238.2 → XP_044802173.1  alpha-synuclein isoform X4

  9. XM_044946230.2 → XP_044802165.1  alpha-synuclein isoform X1

  10. XM_044946232.2 → XP_044802167.1  alpha-synuclein isoform X1

  11. XM_044946233.2 → XP_044802168.1  alpha-synuclein isoform X1

  12. XM_044946236.2 → XP_044802171.1  alpha-synuclein isoform X1

  13. XM_044946235.2 → XP_044802170.1  alpha-synuclein isoform X1

Nucleotide Protein
Heading Accession and Version

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