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XYLB xylulokinase [ Bubalus bubalis (water buffalo) ]

Gene ID: 102393905, updated on 11-Apr-2024

Summary

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Gene symbol
XYLB
Gene description
xylulokinase
See related
EnsemblRapid:ENSBALG00030012366
Gene type
protein coding
RefSeq status
MODEL
Organism
Bubalus bubalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bubalus
Orthologs
human mouse all
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Genomic context

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See XYLB in Genome Data Viewer
Location:
chromosome: 21
Exon count:
20
Annotation release Status Assembly Chr Location
103 current NDDB_SH_1 (GCF_019923935.1) 21 NC_059177.1 (11768702..11811097)
102 previous assembly NDDB_DH_1 (GCF_019923925.1) 21 NC_058363.1 (11689872..11732268)

Chromosome 21 - NC_059177.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 22 member 13 Neighboring gene solute carrier family 22 member 14 Neighboring gene activin A receptor type 2B Neighboring gene uncharacterized LOC112581215 Neighboring gene exo/endonuclease G

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables D-xylulokinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in D-xylose metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in xylulose metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
xylulose kinase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bubalus bubalis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NDDB_SH_1 Primary Assembly

Genomic

  1. NC_059177.1 Reference NDDB_SH_1 Primary Assembly

    Range
    11768702..11811097
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025273010.3 → XP_025128795.3  xylulose kinase isoform X1

  2. XM_025273013.3 → XP_025128798.3  xylulose kinase isoform X3

    Related
    ENSBALP00030023396.1, ENSBALT00030034629.1

  3. XM_025273012.3 → XP_025128797.3  xylulose kinase isoform X2

    Related
    ENSBALP00030023416.1, ENSBALT00030034658.1

  4. XM_006077011.4 → XP_006077073.3  xylulose kinase isoform X4

    Related
    ENSBALP00030023362.1, ENSBALT00030034578.1

  5. XM_044934160.2 → XP_044790095.2  xylulose kinase isoform X5

RNA

  1. XR_003105785.3 RNA Sequence

  2. XR_003105786.3 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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