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HMGCLL1 3-hydroxy-3-methylglutaryl-CoA lyase like 1 [ Bubalus bubalis (water buffalo) ]

Gene ID: 102393854, updated on 11-Apr-2024

Summary

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Gene symbol
HMGCLL1
Gene description
3-hydroxy-3-methylglutaryl-CoA lyase like 1
See related
EnsemblRapid:ENSBALG00030025131
Gene type
protein coding
RefSeq status
MODEL
Organism
Bubalus bubalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bubalus
Orthologs
human mouse all
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Genomic context

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See HMGCLL1 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
9
Annotation release Status Assembly Chr Location
103 current NDDB_SH_1 (GCF_019923935.1) 2 NC_059158.1 (46713806..46909290, complement)
102 previous assembly NDDB_DH_1 (GCF_019923925.1) 2 NC_058344.1 (46646174..46841635, complement)

Chromosome 2 - NC_059158.1Genomic Context describing neighboring genes Neighboring gene hypocretin receptor 2 Neighboring gene GDNF family receptor alpha like Neighboring gene bone morphogenetic protein 5 Neighboring gene collagen type XXI alpha 1 chain

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De Novo Transcriptome Assembly of the Chinese Swamp Buffalo by RNA Sequencing and SSR Marker Discovery. Deng T, et al. PLoS One, 2016. PMID 26766209, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hydroxymethylglutaryl-CoA lyase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in L-leucine catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ketone body biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
3-hydroxymethyl-3-methylglutaryl-CoA lyase, cytoplasmic
Names
3-hydroxymethyl-3-methylglutaryl-CoA lyase L1
3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bubalus bubalis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NDDB_SH_1 Primary Assembly

Genomic

  1. NC_059158.1 Reference NDDB_SH_1 Primary Assembly

    Range
    46713806..46909290 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025272278.3 → XP_025128063.1  3-hydroxymethyl-3-methylglutaryl-CoA lyase, cytoplasmic isoform X2

    Related
    ENSBALP00030047578.1, ENSBALT00030070474.1
    Conserved Domains (1) summary
    PLN02746
    Location:41 → 304
    PLN02746; hydroxymethylglutaryl-CoA lyase

  2. XM_025272276.3 → XP_025128061.1  3-hydroxymethyl-3-methylglutaryl-CoA lyase, cytoplasmic isoform X1

    Related
    ENSBALP00030047529.1, ENSBALT00030070401.1
    Conserved Domains (1) summary
    PLN02746
    Location:41 → 336
    PLN02746; hydroxymethylglutaryl-CoA lyase
Nucleotide Protein
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Gene LinkOut

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