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SGCA sarcoglycan alpha [ Bubalus bubalis (water buffalo) ]

Gene ID: 102393085, updated on 10-Mar-2024

Summary

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Gene symbol
SGCA
Gene description
sarcoglycan alpha
See related
EnsemblRapid:ENSBALG00030029626
Gene type
protein coding
RefSeq status
MODEL
Organism
Bubalus bubalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bubalus
Orthologs
human mouse all
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Genomic context

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See SGCA in Genome Data Viewer
Location:
chromosome: 3
Exon count:
11
Annotation release Status Assembly Chr Location
103 current NDDB_SH_1 (GCF_019923935.1) 3 NC_059159.1 (26621760..26631500)
102 previous assembly NDDB_DH_1 (GCF_019923925.1) 3 NC_058345.1 (26836785..26846527)

Chromosome 3 - NC_059159.1Genomic Context describing neighboring genes Neighboring gene protein phosphatase 1 regulatory subunit 9B Neighboring gene uncharacterized LOC123332621 Neighboring gene spermatid-specific linker histone H1-like protein Neighboring gene collagen type I alpha 1 chain Neighboring gene transmembrane protein 92

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-sarcoglycan

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bubalus bubalis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NDDB_SH_1 Primary Assembly

Genomic

  1. NC_059159.1 Reference NDDB_SH_1 Primary Assembly

    Range
    26621760..26631500
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025280327.3 → XP_025136112.1  alpha-sarcoglycan

    Related
    ENSBALP00030055032.1, ENSBALT00030082142.1
    Conserved Domains (1) summary
    pfam05510
    Location:27 → 351
    Sarcoglycan_2; Sarcoglycan alpha/epsilon

  2. XM_025280326.3 → XP_025136111.1  alpha-sarcoglycan

    Conserved Domains (1) summary
    pfam05510
    Location:27 → 351
    Sarcoglycan_2; Sarcoglycan alpha/epsilon
Nucleotide Protein
Heading Accession and Version

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