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LOC102392369 polypeptide N-acetylgalactosaminyltransferase 4 [ Bubalus bubalis (water buffalo) ]

Gene ID: 102392369, updated on 10-Mar-2024

Summary

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Gene symbol
LOC102392369
Gene description
polypeptide N-acetylgalactosaminyltransferase 4
See related
EnsemblRapid:ENSBALG00030036939
Gene type
protein coding
RefSeq status
MODEL
Organism
Bubalus bubalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bubalus
Also known as
GALNT4
Orthologs
human mouse all
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Genomic context

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See LOC102392369 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
1
Annotation release Status Assembly Chr Location
103 current NDDB_SH_1 (GCF_019923935.1) 4 NC_059160.1 (100786383..100791751)
102 previous assembly NDDB_DH_1 (GCF_019923925.1) 4 NC_058346.1 (99567500..99572868)

Chromosome 4 - NC_059160.1Genomic Context describing neighboring genes Neighboring gene ATPase plasma membrane Ca2+ transporting 1 Neighboring gene small nucleolar RNA snR80 Neighboring gene 40S ribosomal protein S26-like Neighboring gene POC1 centriolar protein B Neighboring gene U6 spliceosomal RNA Neighboring gene 40S ribosomal protein S6-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polypeptide N-acetylgalactosaminyltransferase 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bubalus bubalis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NDDB_SH_1 Primary Assembly

Genomic

  1. NC_059160.1 Reference NDDB_SH_1 Primary Assembly

    Range
    100786383..100791751
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006067020.4 → XP_006067082.1  polypeptide N-acetylgalactosaminyltransferase 4

    Related
    ENSBALP00030068188.1, ENSBALT00030102253.1
    Conserved Domains (4) summary
    cd02510
    Location:142 → 436
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    COG0463
    Location:138 → 434
    WcaA; Glycosyltransferase involved in cell wall bisynthesis [Cell wall/membrane/envelope biogenesis]
    cd00161
    Location:450 → 580
    RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...
    pfam00652
    Location:450 → 578
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
Nucleotide Protein
Heading Accession and Version

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