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OGDH oxoglutarate dehydrogenase [ Bubalus bubalis (water buffalo) ]

Gene ID: 102392279, updated on 10-Mar-2024

Summary

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Gene symbol
OGDH
Gene description
oxoglutarate dehydrogenase
See related
EnsemblRapid:ENSBALG00030036108
Gene type
protein coding
RefSeq status
MODEL
Organism
Bubalus bubalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bubalus
Orthologs
human mouse all
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Genomic context

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See OGDH in Genome Data Viewer
Location:
chromosome: 8
Exon count:
25
Annotation release Status Assembly Chr Location
103 current NDDB_SH_1 (GCF_019923935.1) 8 NC_059164.1 (76305326..76372680, complement)
102 previous assembly NDDB_DH_1 (GCF_019923925.1) 8 NC_058350.1 (75479692..75547088, complement)

Chromosome 8 - NC_059164.1Genomic Context describing neighboring genes Neighboring gene peptidylprolyl isomerase A Neighboring gene zinc finger MIZ-type containing 2 Neighboring gene uncharacterized LOC123334769 Neighboring gene transmembrane p24 trafficking protein 4 Neighboring gene DEAD-box helicase 56

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables oxoglutarate dehydrogenase (succinyl-transferring) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables thiamine pyrophosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in tricarboxylic acid cycle IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of oxoglutarate dehydrogenase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
2-oxoglutarate dehydrogenase, mitochondrial

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bubalus bubalis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NDDB_SH_1 Primary Assembly

Genomic

  1. NC_059164.1 Reference NDDB_SH_1 Primary Assembly

    Range
    76305326..76372680 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006051299.4 → XP_006051361.3  2-oxoglutarate dehydrogenase, mitochondrial isoform X3

    Related
    ENSBALP00030066790.1, ENSBALT00030100103.1
    Conserved Domains (1) summary
    PRK09404
    Location:49 → 1015
    sucA; 2-oxoglutarate dehydrogenase E1 component; Reviewed

  2. XM_006051297.4 → XP_006051359.3  2-oxoglutarate dehydrogenase, mitochondrial isoform X1

    Related
    ENSBALP00030066854.1, ENSBALT00030100195.1
    Conserved Domains (1) summary
    PRK09404
    Location:49 → 1030
    sucA; 2-oxoglutarate dehydrogenase E1 component; Reviewed

  3. XM_006051300.4 → XP_006051362.3  2-oxoglutarate dehydrogenase, mitochondrial isoform X4

    Related
    ENSBALP00030066882.1, ENSBALT00030100237.1
    Conserved Domains (1) summary
    PRK09404
    Location:49 → 1011
    sucA; 2-oxoglutarate dehydrogenase E1 component; Reviewed

  4. XM_006051298.4 → XP_006051360.3  2-oxoglutarate dehydrogenase, mitochondrial isoform X2

    Related
    ENSBALP00030066863.1, ENSBALT00030100211.1
    Conserved Domains (1) summary
    PRK09404
    Location:49 → 1026
    sucA; 2-oxoglutarate dehydrogenase E1 component; Reviewed
Nucleotide Protein
Heading Accession and Version

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