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NYX nyctalopin [ Bubalus bubalis (water buffalo) ]

Gene ID: 102391605, updated on 10-Mar-2024

Summary

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Gene symbol
NYX
Gene description
nyctalopin
Gene type
protein coding
RefSeq status
MODEL
Organism
Bubalus bubalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bubalus
Orthologs
human mouse all
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Genomic context

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See NYX in Genome Data Viewer
Location:
chromosome: X
Exon count:
3
Annotation release Status Assembly Chr Location
103 current NDDB_SH_1 (GCF_019923935.1) X NC_059181.1 (40637026..40663111)
102 previous assembly NDDB_DH_1 (GCF_019923925.1) X NC_058367.1 (42056424..42082506)

Chromosome X - NC_059181.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112582121 Neighboring gene uncharacterized LOC123332013 Neighboring gene 60S ribosomal protein L32-like Neighboring gene uncharacterized LOC123332015 Neighboring gene uncharacterized LOC123331683 Neighboring gene transfer RNA glycine (anticodon UCC) Neighboring gene calcium/calmodulin dependent serine protein kinase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nyctalopin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bubalus bubalis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NDDB_SH_1 Primary Assembly

Genomic

  1. NC_059181.1 Reference NDDB_SH_1 Primary Assembly

    Range
    40637026..40663111
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025276412.3 → XP_025132197.1  nyctalopin

    Conserved Domains (6) summary
    TIGR00864
    Location:289 → 426
    PCC; polycystin cation channel protein
    smart00082
    Location:337 → 371
    LRRCT; Leucine rich repeat C-terminal domain
    sd00031
    Location:329 → 341
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:69 → 88
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:67 → 121
    LRR_8; Leucine rich repeat
    cl26018
    Location:47 → 179
    NEL; C-terminal novel E3 ligase, LRR-interacting
Nucleotide Protein
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