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GPC1 glypican 1 [ Bubalus bubalis (water buffalo) ]

Gene ID: 102391193, updated on 10-Mar-2024

Summary

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Gene symbol
GPC1
Gene description
glypican 1
See related
EnsemblRapid:ENSBALG00030019084
Gene type
protein coding
RefSeq status
MODEL
Organism
Bubalus bubalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bubalus
Orthologs
human mouse all
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Genomic context

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See GPC1 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
9
Annotation release Status Assembly Chr Location
103 current NDDB_SH_1 (GCF_019923935.1) 6 NC_059162.1 (119278683..119305824)
102 previous assembly NDDB_DH_1 (GCF_019923925.1) 6 NC_058348.1 (118386695..118413838)

Chromosome 6 - NC_059162.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112585753 Neighboring gene uncharacterized LOC123334193 Neighboring gene basic proline-rich protein-like Neighboring gene ankyrin repeat and MYND domain containing 1 Neighboring gene dual specificity phosphatase 28

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables fibroblast growth factor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of fibroblast growth factor receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of protein localization to membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell surface IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in collagen-containing extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in synapse IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glypican-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bubalus bubalis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NDDB_SH_1 Primary Assembly

Genomic

  1. NC_059162.1 Reference NDDB_SH_1 Primary Assembly

    Range
    119278683..119305824
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025289280.2 → XP_025145065.1  glypican-1

    Related
    ENSBALP00030035913.1, ENSBALT00030053442.1
    Conserved Domains (1) summary
    pfam01153
    Location:16 → 540
    Glypican
Nucleotide Protein
Heading Accession and Version

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