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BEND6 BEN domain containing 6 [ Bubalus bubalis (water buffalo) ]

Gene ID: 102390723, updated on 10-Mar-2024

Summary

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Gene symbol
BEND6
Gene description
BEN domain containing 6
See related
EnsemblRapid:ENSBALG00030028456
Gene type
protein coding
RefSeq status
MODEL
Organism
Bubalus bubalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bubalus
Orthologs
human mouse all
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Genomic context

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See BEND6 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
8
Annotation release Status Assembly Chr Location
103 current NDDB_SH_1 (GCF_019923935.1) 2 NC_059158.1 (48445837..48510485)
102 previous assembly NDDB_DH_1 (GCF_019923925.1) 2 NC_058344.1 (48369660..48432927)

Chromosome 2 - NC_059158.1Genomic Context describing neighboring genes Neighboring gene dystonin Neighboring gene uncharacterized LOC123330405 Neighboring gene uncharacterized LOC102389072 Neighboring gene small nucleolar RNA SNORA18 Neighboring gene uncharacterized LOC123330406 Neighboring gene 60S ribosomal protein L34-like Neighboring gene uncharacterized LOC102395807 Neighboring gene zinc finger protein 451

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De Novo Transcriptome Assembly of the Chinese Swamp Buffalo by RNA Sequencing and SSR Marker Discovery. Deng T, et al. PLoS One, 2016. PMID 26766209, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription corepressor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of Notch signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of neuron differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
BEN domain-containing protein 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bubalus bubalis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NDDB_SH_1 Primary Assembly

Genomic

  1. NC_059158.1 Reference NDDB_SH_1 Primary Assembly

    Range
    48445837..48510485
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044931977.2 → XP_044787912.1  BEN domain-containing protein 6

    Related
    ENSBALP00030052840.1, ENSBALT00030079152.1
    Conserved Domains (1) summary
    smart01025
    Location:190 → 271
    BEN; The BEN domain is found in diverse animal proteins

  2. XM_006072873.4 → XP_006072935.1  BEN domain-containing protein 6

    See identical proteins and their annotated locations for XP_006072935.1

    Related
    ENSBALP00030052850.1, ENSBALT00030079164.1
    Conserved Domains (1) summary
    smart01025
    Location:190 → 271
    BEN; The BEN domain is found in diverse animal proteins
Nucleotide Protein
Heading Accession and Version

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