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CHST9 carbohydrate sulfotransferase 9 [ Bubalus bubalis (water buffalo) ]

Gene ID: 102390250, updated on 10-Mar-2024

Summary

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Gene symbol
CHST9
Gene description
carbohydrate sulfotransferase 9
See related
EnsemblRapid:ENSBALG00030030911
Gene type
protein coding
RefSeq status
MODEL
Organism
Bubalus bubalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bubalus
Orthologs
human mouse all
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Genomic context

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See CHST9 in Genome Data Viewer
Location:
chromosome: 22
Exon count:
6
Annotation release Status Assembly Chr Location
103 current NDDB_SH_1 (GCF_019923935.1) 22 NC_059178.1 (32128020..32419420, complement)
102 previous assembly NDDB_DH_1 (GCF_019923925.1) 22 NC_058364.1 (32043909..32334132, complement)

Chromosome 22 - NC_059178.1Genomic Context describing neighboring genes Neighboring gene potassium channel tetramerization domain containing 1 Neighboring gene uncharacterized LOC102416601 Neighboring gene aquaporin 4 Neighboring gene peroxisomal membrane protein 4-like Neighboring gene uncharacterized LOC123331137 Neighboring gene motile sperm domain-containing protein 2-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De Novo Transcriptome Assembly of the Chinese Swamp Buffalo by RNA Sequencing and SSR Marker Discovery. Deng T, et al. PLoS One, 2016. PMID 26766209, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteoglycan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carbohydrate sulfotransferase 9

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bubalus bubalis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NDDB_SH_1 Primary Assembly

Genomic

  1. NC_059178.1 Reference NDDB_SH_1 Primary Assembly

    Range
    32128020..32419420 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006068136.4 → XP_006068198.1  carbohydrate sulfotransferase 9

    Related
    ENSBALP00030056604.1, ENSBALT00030085197.1
    Conserved Domains (1) summary
    pfam03567
    Location:208 → 437
    Sulfotransfer_2; Sulfotransferase family
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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