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CHRNE cholinergic receptor nicotinic epsilon subunit [ Bubalus bubalis (water buffalo) ]

Gene ID: 102389663, updated on 10-Mar-2024

Summary

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Gene symbol
CHRNE
Gene description
cholinergic receptor nicotinic epsilon subunit
See related
EnsemblRapid:ENSBALG00030007280
Gene type
protein coding
RefSeq status
MODEL
Organism
Bubalus bubalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bubalus
Orthologs
human mouse all
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Genomic context

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See CHRNE in Genome Data Viewer
Location:
chromosome: 3
Exon count:
14
Annotation release Status Assembly Chr Location
103 current NDDB_SH_1 (GCF_019923935.1) 3 NC_059159.1 (36600802..36605832, complement)
102 previous assembly NDDB_DH_1 (GCF_019923925.1) 3 NC_058345.1 (36535718..36540749, complement)

Chromosome 3 - NC_059159.1Genomic Context describing neighboring genes Neighboring gene phospholipase D2 Neighboring gene misshapen like kinase 1 Neighboring gene glycoprotein Ib platelet subunit alpha Neighboring gene solute carrier family 25 member 11

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables acetylcholine-gated monoatomic cation-selective channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transmembrane signaling receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chemical synaptic transmission IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in monoatomic ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nervous system process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of membrane potential IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in neuron projection IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in postsynaptic membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in synapse IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
acetylcholine receptor subunit epsilon

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bubalus bubalis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NDDB_SH_1 Primary Assembly

Genomic

  1. NC_059159.1 Reference NDDB_SH_1 Primary Assembly

    Range
    36600802..36605832 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025280748.2 → XP_025136533.1  acetylcholine receptor subunit epsilon isoform X1

    Related
    ENSBALP00030013396.1, ENSBALT00030020207.1
    Conserved Domains (2) summary
    pfam02931
    Location:67 → 283
    Neur_chan_LBD; Neurotransmitter-gated ion-channel ligand binding domain
    pfam02932
    Location:290 → 517
    Neur_chan_memb; Neurotransmitter-gated ion-channel transmembrane region

  2. XM_025280749.2 → XP_025136534.1  acetylcholine receptor subunit epsilon isoform X2

    Conserved Domains (2) summary
    pfam02931
    Location:24 → 240
    Neur_chan_LBD; Neurotransmitter-gated ion-channel ligand binding domain
    pfam02932
    Location:247 → 513
    Neur_chan_memb; Neurotransmitter-gated ion-channel transmembrane region

  3. XM_006060078.3 → XP_006060140.1  acetylcholine receptor subunit epsilon isoform X3

    Related
    ENSBALP00030013390.1, ENSBALT00030020193.1
    Conserved Domains (3) summary
    TIGR00860
    Location:21 → 475
    LIC; Cation transporter family protein
    pfam02931
    Location:24 → 240
    Neur_chan_LBD; Neurotransmitter-gated ion-channel ligand binding domain
    pfam02932
    Location:247 → 474
    Neur_chan_memb; Neurotransmitter-gated ion-channel transmembrane region

  4. XM_025280750.1 → XP_025136535.1  acetylcholine receptor subunit epsilon isoform X4

    Conserved Domains (2) summary
    pfam02932
    Location:112 → 378
    Neur_chan_memb; Neurotransmitter-gated ion-channel transmembrane region
    cl27321
    Location:3 → 105
    Neur_chan_LBD; Neurotransmitter-gated ion-channel ligand binding domain
Nucleotide Protein
Heading Accession and Version

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