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LOC102389577 proteasome subunit alpha type-6-like [ Bubalus bubalis (water buffalo) ]

Gene ID: 102389577, updated on 28-Nov-2023

Summary

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Gene symbol
LOC102389577
Gene description
proteasome subunit alpha type-6-like
See related
EnsemblRapid:ENSBALG00030014662
Gene type
protein coding
RefSeq status
MODEL
Organism
Bubalus bubalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bubalus
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Genomic context

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See LOC102389577 in Genome Data Viewer
Location:
chromosome: 15
Exon count:
1
Annotation release Status Assembly Chr Location
103 current NDDB_SH_1 (GCF_019923935.1) 15 NC_059171.1 (63275404..63276330, complement)
102 previous assembly NDDB_DH_1 (GCF_019923925.1) 15 NC_058357.1 (63006211..63007131, complement)

Chromosome 15 - NC_059171.1Genomic Context describing neighboring genes Neighboring gene cryptic protein-like Neighboring gene serine protease 40 Neighboring gene uncharacterized LOC112579202 Neighboring gene transfer RNA methionine (anticodon CAU)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of proteasome core complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of proteasome core complex, alpha-subunit complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
proteasome subunit alpha type-6-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bubalus bubalis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NDDB_SH_1 Primary Assembly

Genomic

  1. NC_059171.1 Reference NDDB_SH_1 Primary Assembly

    Range
    63275404..63276330 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044928783.2 → XP_044784718.1  proteasome subunit alpha type-6-like

    Related
    ENSBALP00030026991.1, ENSBALT00030040765.1
    Conserved Domains (1) summary
    cd03754
    Location:8 → 220
    proteasome_alpha_type_6; The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming ...
Nucleotide Protein
Heading Accession and Version

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