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GAPDH glyceraldehyde-3-phosphate dehydrogenase [ Alligator sinensis (Chinese alligator) ]

Gene ID: 102388535, updated on 10-Mar-2024

Summary

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Gene symbol
GAPDH
Gene description
glyceraldehyde-3-phosphate dehydrogenase
Gene type
protein coding
RefSeq status
MODEL
Organism
Alligator sinensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
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Genomic context

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See GAPDH in Genome Data Viewer
Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
102 current ASM45574v1 (GCF_000455745.1) Unplaced Scaffold NW_005842436.1 (988637..992276)

NW_005842436.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA U85 Neighboring gene mitochondrial ribosomal protein L51 Neighboring gene non-SMC condensin I complex subunit D2 Neighboring gene intermediate filament family orphan 1 Neighboring gene NOP2 nucleolar protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005842436 Unplaced Scaffold Reference ASM45574v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables NAD binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables NADP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glucose metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glyceraldehyde-3-phosphate dehydrogenase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Alligator sinensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM45574v1 Primary Assembly

Genomic

  1. NW_005842436.1 Reference ASM45574v1 Primary Assembly

    Range
    988637..992276
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025211893.1 → XP_025067678.1  glyceraldehyde-3-phosphate dehydrogenase

    UniProtKB/TrEMBL
    A0A3Q0HB56
    Conserved Domains (2) summary
    cl17238
    Location:11 → 57
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
    cl27764
    Location:76 → 397
    Gp_dh_N; Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
Nucleotide Protein
Heading Accession and Version

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