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LOC102388086 aspartyl/asparaginyl beta-hydroxylase [ Alligator sinensis (Chinese alligator) ]

Gene ID: 102388086, updated on 9-Nov-2023

Summary

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Gene symbol
LOC102388086
Gene description
aspartyl/asparaginyl beta-hydroxylase
Gene type
protein coding
RefSeq status
MODEL
Organism
Alligator sinensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
Also known as
ASPH
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Genomic context

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See LOC102388086 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
102 current ASM45574v1 (GCF_000455745.1) Unplaced Scaffold NW_005841923.1 (2791329..2855241)

NW_005841923.1Genomic Context describing neighboring genes Neighboring gene sodium/potassium transporting ATPase interacting 3 Neighboring gene uncharacterized LOC112549511 Neighboring gene aspartyl/asparaginyl beta-hydroxylase-like Neighboring gene clavesin 1 Neighboring gene transfer RNA cysteine (anticodon ACA)

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005841923 Unplaced Scaffold Reference ASM45574v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables peptidyl-aspartic acid 3-dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in peptidyl-aspartic acid hydroxylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
aspartyl/asparaginyl beta-hydroxylase
Names
aspartate beta-hydroxylase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Alligator sinensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM45574v1 Primary Assembly

Genomic

  1. NW_005841923.1 Reference ASM45574v1 Primary Assembly

    Range
    2791329..2855241
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025198492.1 → XP_025054277.1  aspartyl/asparaginyl beta-hydroxylase

    UniProtKB/TrEMBL
    A0A3Q0G4B1
    Conserved Domains (3) summary
    sd00006
    Location:129 → 154
    TPR; TPR repeat [structural motif]
    pfam05118
    Location:297 → 450
    Asp_Arg_Hydrox; Aspartyl/Asparaginyl beta-hydroxylase
    cl26002
    Location:47 → 233
    TPR_11; TPR repeat
Nucleotide Protein
Heading Accession and Version

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