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ZBTB6 zinc finger and BTB domain containing 6 [ Alligator sinensis (Chinese alligator) ]

Gene ID: 102387653, updated on 10-Mar-2024

Summary

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Gene symbol
ZBTB6
Gene description
zinc finger and BTB domain containing 6
Gene type
protein coding
RefSeq status
MODEL
Organism
Alligator sinensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
Orthologs
human mouse all
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Genomic context

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See ZBTB6 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
2
Annotation release Status Assembly Chr Location
102 current ASM45574v1 (GCF_000455745.1) Unplaced Scaffold NW_005841869.1 (2118495..2123719, complement)

NW_005841869.1Genomic Context describing neighboring genes Neighboring gene ring finger and CCCH-type domains 2 Neighboring gene uncharacterized LOC112548416 Neighboring gene small nucleolar RNA SNORD90 Neighboring gene zinc finger and BTB domain containing 26 Neighboring gene RAB GTPase activating protein 1 Neighboring gene G protein-coupled receptor 21

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005841869 Unplaced Scaffold Reference ASM45574v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger and BTB domain-containing protein 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Alligator sinensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM45574v1 Primary Assembly

Genomic

  1. NW_005841869.1 Reference ASM45574v1 Primary Assembly

    Range
    2118495..2123719 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014526785.2 → XP_014382271.1  zinc finger and BTB domain-containing protein 6

    UniProtKB/TrEMBL
    A0A1U7RFB6
    Conserved Domains (4) summary
    COG5048
    Location:241 → 406
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:329 → 349
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00651
    Location:23 → 127
    BTB; BTB/POZ domain
    pfam13465
    Location:341 → 365
    zf-H2C2_2; Zinc-finger double domain

  2. XM_025194119.1 → XP_025049904.1  zinc finger and BTB domain-containing protein 6

    UniProtKB/TrEMBL
    A0A1U7RFB6
    Conserved Domains (4) summary
    COG5048
    Location:241 → 406
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:329 → 349
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00651
    Location:23 → 127
    BTB; BTB/POZ domain
    pfam13465
    Location:341 → 365
    zf-H2C2_2; Zinc-finger double domain

  3. XM_006016898.3 → XP_006016960.1  zinc finger and BTB domain-containing protein 6

    UniProtKB/TrEMBL
    A0A1U7RFB6
    Conserved Domains (4) summary
    COG5048
    Location:241 → 406
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:329 → 349
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00651
    Location:23 → 127
    BTB; BTB/POZ domain
    pfam13465
    Location:341 → 365
    zf-H2C2_2; Zinc-finger double domain

  4. XM_025194128.1 → XP_025049913.1  zinc finger and BTB domain-containing protein 6

    UniProtKB/TrEMBL
    A0A1U7RFB6
    Conserved Domains (4) summary
    COG5048
    Location:241 → 406
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:329 → 349
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00651
    Location:23 → 127
    BTB; BTB/POZ domain
    pfam13465
    Location:341 → 365
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein
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