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PCYT1B phosphate cytidylyltransferase 1B, choline [ Alligator sinensis (Chinese alligator) ]

Gene ID: 102386163, updated on 10-Mar-2024

Summary

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Gene symbol
PCYT1B
Gene description
phosphate cytidylyltransferase 1B, choline
Gene type
protein coding
RefSeq status
MODEL
Organism
Alligator sinensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
Orthologs
human mouse all
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Genomic context

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See PCYT1B in Genome Data Viewer
Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
102 current ASM45574v1 (GCF_000455745.1) Unplaced Scaffold NW_005841932.1 (224924..283379, complement)

NW_005841932.1Genomic Context describing neighboring genes Neighboring gene organic solute transporter subunit alpha-like Neighboring gene small Cajal body-specific RNA 24 Neighboring gene pyruvate dehydrogenase kinase 3 Neighboring gene DNA polymerase alpha 1, catalytic subunit Neighboring gene uncharacterized LOC102386409

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005841932 Unplaced Scaffold Reference ASM45574v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables choline-phosphate cytidylyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phosphatidylcholine binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in CDP-choline pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
choline-phosphate cytidylyltransferase B
Names
phosphate cytidylyltransferase 1, choline, beta

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Alligator sinensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM45574v1 Primary Assembly

Genomic

  1. NW_005841932.1 Reference ASM45574v1 Primary Assembly

    Range
    224924..283379 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014517936.2 → XP_014373422.1  choline-phosphate cytidylyltransferase B isoform X1

    UniProtKB/TrEMBL
    A0A1U8CWK3
    Conserved Domains (1) summary
    cd02174
    Location:60 → 209
    CCT; CTP:phosphocholine cytidylyltransferase

  2. XM_025198933.1 → XP_025054718.1  choline-phosphate cytidylyltransferase B isoform X2

    UniProtKB/TrEMBL
    A0A3Q0G9A0
    Conserved Domains (1) summary
    cl28626
    Location:72 → 293
    PLN02406; ethanolamine-phosphate cytidylyltransferase
Nucleotide Protein
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