U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

ACSS1 acyl-CoA synthetase short chain family member 1 [ Alligator sinensis (Chinese alligator) ]

Gene ID: 102386026, updated on 10-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
ACSS1
Gene description
acyl-CoA synthetase short chain family member 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Alligator sinensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See ACSS1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
14
Annotation release Status Assembly Chr Location
102 current ASM45574v1 (GCF_000455745.1) Unplaced Scaffold NW_005842279.1 (262338..327064, complement)

NW_005842279.1Genomic Context describing neighboring genes Neighboring gene cystatin F Neighboring gene adipocyte plasma membrane associated protein Neighboring gene visual system homeobox 1 Neighboring gene ectonucleoside triphosphate diphosphohydrolase 6

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_005842279 Unplaced Scaffold Reference ASM45574v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables AMP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables acetate-CoA ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in acetyl-CoA biosynthetic process from acetate IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
acetyl-coenzyme A synthetase 2-like, mitochondrial

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Alligator sinensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM45574v1 Primary Assembly

Genomic

  1. NW_005842279.1 Reference ASM45574v1 Primary Assembly

    Range
    262338..327064 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025209289.1 → XP_025065074.1  acetyl-coenzyme A synthetase 2-like, mitochondrial

    UniProtKB/TrEMBL
    A0A3Q0GZ91
    Conserved Domains (1) summary
    cl27677
    Location:2 → 529
    PRK07788; acyl-CoA synthetase; Validated
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.