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LPGAT1 lysophosphatidylglycerol acyltransferase 1 [ Alligator sinensis (Chinese alligator) ]

Gene ID: 102385939, updated on 10-Mar-2024

Summary

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Gene symbol
LPGAT1
Gene description
lysophosphatidylglycerol acyltransferase 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Alligator sinensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
Orthologs
human mouse all
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Genomic context

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See LPGAT1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
102 current ASM45574v1 (GCF_000455745.1) Unplaced Scaffold NW_005842341.1 (1292506..1402641)

NW_005842341.1Genomic Context describing neighboring genes Neighboring gene protein phosphatase 2 regulatory subunit B'alpha Neighboring gene denticleless E3 ubiquitin protein ligase homolog Neighboring gene integrator complex subunit 7 Neighboring gene NIMA related kinase 2 Neighboring gene solute carrier family 30 member 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005842341 Unplaced Scaffold Reference ASM45574v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables acyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endomembrane system IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
acyl-CoA:lysophosphatidylglycerol acyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Alligator sinensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM45574v1 Primary Assembly

Genomic

  1. NW_005842341.1 Reference ASM45574v1 Primary Assembly

    Range
    1292506..1402641
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006028795.3 → XP_006028857.1  acyl-CoA:lysophosphatidylglycerol acyltransferase 1

    UniProtKB/TrEMBL
    A0A1U7S038
    Conserved Domains (2) summary
    cd07990
    Location:69 → 285
    LPLAT_LCLAT1-like; Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: LCLAT1-like
    pfam16076
    Location:274 → 330
    Acyltransf_C; Acyltransferase C-terminus
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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