U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SGCD sarcoglycan delta [ Alligator sinensis (Chinese alligator) ]

Gene ID: 102385423, updated on 10-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
SGCD
Gene description
sarcoglycan delta
Gene type
protein coding
RefSeq status
MODEL
Organism
Alligator sinensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See SGCD in Genome Data Viewer
Location:
chromosome: Un
Exon count:
15
Annotation release Status Assembly Chr Location
102 current ASM45574v1 (GCF_000455745.1) Unplaced Scaffold NW_005841980.1 (205298..611115, complement)

NW_005841980.1Genomic Context describing neighboring genes Neighboring gene hepatitis A virus cellular receptor 1 homolog Neighboring gene hepatitis A virus cellular receptor 1-like Neighboring gene mitochondrial ribosomal protein L22 Neighboring gene gem nuclear organelle associated protein 5

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_005841980 Unplaced Scaffold Reference ASM45574v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cardiac muscle tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
delta-sarcoglycan

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Alligator sinensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM45574v1 Primary Assembly

Genomic

  1. NW_005841980.1 Reference ASM45574v1 Primary Assembly

    Range
    205298..611115 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006021126.2 → XP_006021188.1  delta-sarcoglycan isoform X5

    See identical proteins and their annotated locations for XP_006021188.1

    UniProtKB/TrEMBL
    A0A1U7RVT1
    Conserved Domains (1) summary
    pfam04790
    Location:22 → 276
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  2. XM_025200974.1 → XP_025056759.1  delta-sarcoglycan isoform X4

    UniProtKB/TrEMBL
    A0A3Q0GAX6

  3. XM_025200975.1 → XP_025056760.1  delta-sarcoglycan isoform X5

    UniProtKB/TrEMBL
    A0A1U7RVT1
    Conserved Domains (1) summary
    pfam04790
    Location:22 → 276
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  4. XM_025200971.1 → XP_025056756.1  delta-sarcoglycan isoform X2

    UniProtKB/TrEMBL
    A0A3Q0GAR0

  5. XM_025200972.1 → XP_025056757.1  delta-sarcoglycan isoform X2

    UniProtKB/TrEMBL
    A0A3Q0GAR0

  6. XM_025200970.1 → XP_025056755.1  delta-sarcoglycan isoform X1

    UniProtKB/TrEMBL
    A0A3Q0GE90

  7. XM_025200976.1 → XP_025056761.1  delta-sarcoglycan isoform X5

    UniProtKB/TrEMBL
    A0A1U7RVT1
    Conserved Domains (1) summary
    pfam04790
    Location:22 → 276
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  8. XM_025200973.1 → XP_025056758.1  delta-sarcoglycan isoform X3

    UniProtKB/TrEMBL
    A0A3Q0GF39
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.