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SGMS2 sphingomyelin synthase 2 [ Alligator sinensis (Chinese alligator) ]

Gene ID: 102384963, updated on 10-Mar-2024

Summary

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Gene symbol
SGMS2
Gene description
sphingomyelin synthase 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Alligator sinensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
Orthologs
human mouse all
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Genomic context

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See SGMS2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
102 current ASM45574v1 (GCF_000455745.1) Unplaced Scaffold NW_005842484.1 (794169..863195)

NW_005842484.1Genomic Context describing neighboring genes Neighboring gene transfer RNA threonine (anticodon AGU) Neighboring gene 3'-phosphoadenosine 5'-phosphosulfate synthase 1 Neighboring gene hydroxyacyl-CoA dehydrogenase Neighboring gene lymphoid enhancer binding factor 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005842484 Unplaced Scaffold Reference ASM45574v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ceramide cholinephosphotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sphingomyelin synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ceramide biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sphingomyelin biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
phosphatidylcholine:ceramide cholinephosphotransferase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Alligator sinensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM45574v1 Primary Assembly

Genomic

  1. NW_005842484.1 Reference ASM45574v1 Primary Assembly

    Range
    794169..863195
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025212780.1 → XP_025068565.1  phosphatidylcholine:ceramide cholinephosphotransferase 2

    UniProtKB/TrEMBL
    A0A1U7S8R3
    Conserved Domains (1) summary
    pfam14360
    Location:220 → 293
    PAP2_C; PAP2 superfamily C-terminal

  2. XM_006031135.3 → XP_006031197.1  phosphatidylcholine:ceramide cholinephosphotransferase 2

    See identical proteins and their annotated locations for XP_006031197.1

    UniProtKB/TrEMBL
    A0A1U7S8R3
    Conserved Domains (1) summary
    pfam14360
    Location:220 → 293
    PAP2_C; PAP2 superfamily C-terminal

  3. XM_025212779.1 → XP_025068564.1  phosphatidylcholine:ceramide cholinephosphotransferase 2

    UniProtKB/TrEMBL
    A0A1U7S8R3
    Conserved Domains (1) summary
    pfam14360
    Location:220 → 293
    PAP2_C; PAP2 superfamily C-terminal
Nucleotide Protein
Heading Accession and Version

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