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COLGALT1 collagen beta(1-O)galactosyltransferase 1 [ Alligator sinensis (Chinese alligator) ]

Gene ID: 102384904, updated on 10-Mar-2024

Summary

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Gene symbol
COLGALT1
Gene description
collagen beta(1-O)galactosyltransferase 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Alligator sinensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
Orthologs
human mouse all
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Genomic context

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See COLGALT1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
102 current ASM45574v1 (GCF_000455745.1) Unplaced Scaffold NW_005843166.1 (241808..258848, complement)

NW_005843166.1Genomic Context describing neighboring genes Neighboring gene nudE neurodevelopment protein 1 like 1 Neighboring gene ring finger protein 222 Neighboring gene niban apoptosis regulator 3 Neighboring gene solute carrier family 27 member 1 Neighboring gene 6-phosphogluconolactonase

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005843166 Unplaced Scaffold Reference ASM45574v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables procollagen galactosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
procollagen galactosyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Alligator sinensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM45574v1 Primary Assembly

Genomic

  1. NW_005843166.1 Reference ASM45574v1 Primary Assembly

    Range
    241808..258848 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025194175.1 → XP_025049960.1  procollagen galactosyltransferase 1 isoform X1

    UniProtKB/TrEMBL
    A0A3Q0FUY2

  2. XM_025194177.1 → XP_025049962.1  procollagen galactosyltransferase 1 isoform X3

    UniProtKB/TrEMBL
    A0A3Q0FRQ0

  3. XM_025194176.1 → XP_025049961.1  procollagen galactosyltransferase 1 isoform X2

    UniProtKB/TrEMBL
    A0A3Q0FQN3
    Conserved Domains (1) summary
    cd06532
    Location:223 → 406
    Glyco_transf_25; Glycosyltransferase family 25 [lipooligosaccharide (LOS) biosynthesis protein] is a family of glycosyltransferases involved in LOS biosynthesis. The members include the beta(1,4) galactosyltransferases: Lgt2 of Moraxella catarrhalis, LgtB and LgtE of ...
Nucleotide Protein
Heading Accession and Version

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