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ORMDL1 ORMDL sphingolipid biosynthesis regulator 1 [ Alligator sinensis (Chinese alligator) ]

Gene ID: 102384562, updated on 19-Jun-2024

Summary

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Gene symbol
ORMDL1
Gene description
ORMDL sphingolipid biosynthesis regulator 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Alligator sinensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
Orthologs
human mouse all
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Genomic context

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See ORMDL1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
102 current ASM45574v1 (GCF_000455745.1) Unplaced Scaffold NW_005843016.1 (102154..109908)

NW_005843016.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102383989 Neighboring gene PMS1 homolog 1, mismatch repair system component Neighboring gene uncharacterized LOC106723033 Neighboring gene O-sialoglycoprotein endopeptidase like 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005843016 Unplaced Scaffold Reference ASM45574v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in ceramide metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intracellular sphingolipid homeostasis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of ceramide biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ORM1-like protein 1
Names
ORM1-like 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Alligator sinensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM45574v1 Primary Assembly

Genomic

  1. NW_005843016.1 Reference ASM45574v1 Primary Assembly

    Range
    102154..109908
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025193110.1 → XP_025048895.1  ORM1-like protein 1

    UniProtKB/TrEMBL
    A0A1U7SRT5
    Conserved Domains (1) summary
    pfam04061
    Location:11 → 146
    ORMDL; ORMDL family

  2. XM_006036766.3 → XP_006036828.1  ORM1-like protein 1

    See identical proteins and their annotated locations for XP_006036828.1

    UniProtKB/TrEMBL
    A0A1U7SRT5
    Conserved Domains (1) summary
    pfam04061
    Location:11 → 146
    ORMDL; ORMDL family
Nucleotide Protein
Heading Accession and Version

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