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CHST11 carbohydrate sulfotransferase 11 [ Alligator sinensis (Chinese alligator) ]

Gene ID: 102384031, updated on 10-Mar-2024

Summary

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Gene symbol
CHST11
Gene description
carbohydrate sulfotransferase 11
Gene type
protein coding
RefSeq status
MODEL
Organism
Alligator sinensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
Orthologs
human mouse all
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Genomic context

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See CHST11 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
102 current ASM45574v1 (GCF_000455745.1) Unplaced Scaffold NW_005842100.1 (377633..543391)

NW_005842100.1Genomic Context describing neighboring genes Neighboring gene nuclear transcription factor Y subunit beta Neighboring gene thioredoxin reductase 1 Neighboring gene uncharacterized LOC106722236 Neighboring gene solute carrier family 41 member 2 Neighboring gene NOP protein chaperone 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005842100 Unplaced Scaffold Reference ASM45574v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteoglycan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carbohydrate sulfotransferase 11

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Alligator sinensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM45574v1 Primary Assembly

Genomic

  1. NW_005842100.1 Reference ASM45574v1 Primary Assembly

    Range
    377633..543391
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025204882.1 → XP_025060667.1  carbohydrate sulfotransferase 11

    UniProtKB/TrEMBL
    A0A3Q0GMJ9
    Conserved Domains (1) summary
    pfam03567
    Location:81 → 311
    Sulfotransfer_2; Sulfotransferase family
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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