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CHPF2 chondroitin polymerizing factor 2 [ Alligator sinensis (Chinese alligator) ]

Gene ID: 102383905, updated on 10-Mar-2024

Summary

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Gene symbol
CHPF2
Gene description
chondroitin polymerizing factor 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Alligator sinensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
Orthologs
human mouse all
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Genomic context

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See CHPF2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
2
Annotation release Status Assembly Chr Location
102 current ASM45574v1 (GCF_000455745.1) Unplaced Scaffold NW_005843061.1 (365115..368692)

NW_005843061.1Genomic Context describing neighboring genes Neighboring gene late histone H2B.L4-like Neighboring gene ATP binding cassette subfamily F member 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005843061 Unplaced Scaffold Reference ASM45574v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chondroitin sulfate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi cisterna membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chondroitin sulfate glucuronyltransferase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Alligator sinensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM45574v1 Primary Assembly

Genomic

  1. NW_005843061.1 Reference ASM45574v1 Primary Assembly

    Range
    365115..368692
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006037078.3 → XP_006037140.1  chondroitin sulfate glucuronyltransferase

    UniProtKB/TrEMBL
    A0A1U7SG47
    Conserved Domains (2) summary
    pfam05679
    Location:120 → 528
    CHGN; Chondroitin N-acetylgalactosaminyltransferase
    cl21608
    Location:32 → 115
    Galactosyl_T; Galactosyltransferase
Nucleotide Protein
Heading Accession and Version

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