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SMPD4 sphingomyelin phosphodiesterase 4 [ Alligator sinensis (Chinese alligator) ]

Gene ID: 102381624, updated on 10-Mar-2024

Summary

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Gene symbol
SMPD4
Gene description
sphingomyelin phosphodiesterase 4
Gene type
protein coding
RefSeq status
MODEL
Organism
Alligator sinensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
Orthologs
human mouse all
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Genomic context

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See SMPD4 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
19
Annotation release Status Assembly Chr Location
102 current ASM45574v1 (GCF_000455745.1) Unplaced Scaffold NW_005841940.1 (2366894..2395489)

NW_005841940.1Genomic Context describing neighboring genes Neighboring gene gamma-glutamyltransferase 5 Neighboring gene uncharacterized LOC102381462 Neighboring gene coiled-coil domain-containing protein 74B Neighboring gene uncharacterized LOC112549613 Neighboring gene mediator complex subunit 15

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005841940 Unplaced Scaffold Reference ASM45574v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sphingomyelin phosphodiesterase D activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ceramide biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in glycerophospholipid catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sphingomyelin catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sphingomyelin phosphodiesterase 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Alligator sinensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM45574v1 Primary Assembly

Genomic

  1. NW_005841940.1 Reference ASM45574v1 Primary Assembly

    Range
    2366894..2395489
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006019884.3 → XP_006019946.1  sphingomyelin phosphodiesterase 4 isoform X1

    UniProtKB/TrEMBL
    A0A1U7RTC0
    Conserved Domains (1) summary
    pfam14724
    Location:8 → 772
    mit_SMPDase; Mitochondrial-associated sphingomyelin phosphodiesterase

  2. XM_006019885.3 → XP_006019947.1  sphingomyelin phosphodiesterase 4 isoform X2

    UniProtKB/TrEMBL
    A0A1U7RVV0
    Conserved Domains (1) summary
    pfam14724
    Location:8 → 742
    mit_SMPDase; Mitochondrial-associated sphingomyelin phosphodiesterase
Nucleotide Protein
Heading Accession and Version

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