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GPC3 glypican 3 [ Alligator sinensis (Chinese alligator) ]

Gene ID: 102377213, updated on 10-Mar-2024

Summary

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Gene symbol
GPC3
Gene description
glypican 3
Gene type
protein coding
RefSeq status
MODEL
Organism
Alligator sinensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
Orthologs
human mouse all
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Genomic context

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See GPC3 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
102 current ASM45574v1 (GCF_000455745.1) Unplaced Scaffold NW_005842646.1 (330193..576243, complement)

NW_005842646.1Genomic Context describing neighboring genes Neighboring gene heparan-sulfate 6-O-sulfotransferase 2-like Neighboring gene glypican 4 Neighboring gene coiled-coil domain containing 160 Neighboring gene PHD finger protein 6

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005842646 Unplaced Scaffold Reference ASM45574v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of canonical Wnt signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of protein localization to membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell surface IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in collagen-containing extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glypican-3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Alligator sinensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM45574v1 Primary Assembly

Genomic

  1. NW_005842646.1 Reference ASM45574v1 Primary Assembly

    Range
    330193..576243 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014524665.2 → XP_014380151.2  glypican-3 isoform X1

    UniProtKB/TrEMBL
    A0A1U8DIL2
    Conserved Domains (1) summary
    pfam01153
    Location:42 → 510
    Glypican

  2. XM_025215478.1 → XP_025071263.1  glypican-3 isoform X2

    UniProtKB/TrEMBL
    A0A3Q0HLF1
    Conserved Domains (1) summary
    pfam01153
    Location:9 → 482
    Glypican
Nucleotide Protein
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