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GALNTL6 polypeptide N-acetylgalactosaminyltransferase like 6 [ Alligator sinensis (Chinese alligator) ]

Gene ID: 102376533, updated on 10-Mar-2024

Summary

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Gene symbol
GALNTL6
Gene description
polypeptide N-acetylgalactosaminyltransferase like 6
Gene type
protein coding
RefSeq status
MODEL
Organism
Alligator sinensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
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Genomic context

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See GALNTL6 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
102 current ASM45574v1 (GCF_000455745.1) Unplaced Scaffold NW_005842024.1 (2688798..2857384, complement)

NW_005842024.1Genomic Context describing neighboring genes Neighboring gene high mobility group box 2 Neighboring gene polypeptide N-acetylgalactosaminyltransferase 7

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005842024 Unplaced Scaffold Reference ASM45574v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polypeptide N-acetylgalactosaminyltransferase-like 6
Names
UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Alligator sinensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM45574v1 Primary Assembly

Genomic

  1. NW_005842024.1 Reference ASM45574v1 Primary Assembly

    Range
    2688798..2857384 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006022236.2 → XP_006022298.1  polypeptide N-acetylgalactosaminyltransferase-like 6

    UniProtKB/TrEMBL
    A0A1U7RY26
    Conserved Domains (3) summary
    cd02510
    Location:40 → 310
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    cd00161
    Location:328 → 456
    RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...
    pfam00652
    Location:326 → 454
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
Nucleotide Protein
Heading Accession and Version

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