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POMT2 protein O-mannosyltransferase 2 [ Alligator sinensis (Chinese alligator) ]

Gene ID: 102373766, updated on 10-Mar-2024

Summary

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Gene symbol
POMT2
Gene description
protein O-mannosyltransferase 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Alligator sinensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
Orthologs
human mouse all
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Genomic context

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See POMT2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
22
Annotation release Status Assembly Chr Location
102 current ASM45574v1 (GCF_000455745.1) Unplaced Scaffold NW_005842900.1 (279019..324713)

NW_005842900.1Genomic Context describing neighboring genes Neighboring gene transmembrane p24 trafficking protein family member 8 Neighboring gene glutathione S-transferase zeta 1 Neighboring gene neuroglobin Neighboring gene transmembrane protein 63C

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005842900 Unplaced Scaffold Reference ASM45574v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein O-mannosyl-transferase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Alligator sinensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM45574v1 Primary Assembly

Genomic

  1. NW_005842900.1 Reference ASM45574v1 Primary Assembly

    Range
    279019..324713
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006035965.3 → XP_006036027.1  protein O-mannosyl-transferase 2

    UniProtKB/TrEMBL
    A0A1U7SHW0
    Conserved Domains (4) summary
    smart00472
    Location:397 → 452
    MIR; Domain in ryanodine and inositol trisphosphate receptors and protein O-mannosyltransferases
    COG1928
    Location:56 → 743
    PMT1; Dolichyl-phosphate-mannose--protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones]
    pfam02366
    Location:56 → 299
    PMT; Dolichyl-phosphate-mannose-protein mannosyltransferase
    pfam16192
    Location:531 → 741
    PMT_4TMC; C-terminal four TMM region of protein-O-mannosyltransferase

RNA

  1. XR_003091864.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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