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LOC102373345 caspase-1-like [ Alligator sinensis (Chinese alligator) ]

Gene ID: 102373345, updated on 9-Nov-2023

Summary

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Gene symbol
LOC102373345
Gene description
caspase-1-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Alligator sinensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
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Genomic context

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See LOC102373345 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
102 current ASM45574v1 (GCF_000455745.1) Unplaced Scaffold NW_005842661.1 (125398..134971, complement)

NW_005842661.1Genomic Context describing neighboring genes Neighboring gene heat shock factor protein 5-like Neighboring gene myotubularin related protein 4 Neighboring gene abhydrolase domain containing 11 Neighboring gene claudin 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005842661 Unplaced Scaffold Reference ASM45574v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
caspase-1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Alligator sinensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM45574v1 Primary Assembly

Genomic

  1. NW_005842661.1 Reference ASM45574v1 Primary Assembly

    Range
    125398..134971 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006033783.3 → XP_006033845.1  caspase-1-like isoform X2

    UniProtKB/TrEMBL
    A0A1U7S9T5
    Conserved Domains (2) summary
    smart00115
    Location:149 → 393
    CASc; Caspase, interleukin-1 beta converting enzyme (ICE) homologues
    pfam00619
    Location:3 → 89
    CARD; Caspase recruitment domain

  2. XM_025215680.1 → XP_025071465.1  caspase-1-like isoform X1

    UniProtKB/TrEMBL
    A0A3Q0HLP1
    Conserved Domains (2) summary
    smart00115
    Location:168 → 412
    CASc; Caspase, interleukin-1 beta converting enzyme (ICE) homologues
    pfam00619
    Location:22 → 108
    CARD; Caspase recruitment domain
Nucleotide Protein
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