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ATRNL1 attractin like 1 [ Alligator sinensis (Chinese alligator) ]

Gene ID: 102373256, updated on 10-Mar-2024

Summary

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Gene symbol
ATRNL1
Gene description
attractin like 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Alligator sinensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
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Genomic context

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See ATRNL1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
24
Annotation release Status Assembly Chr Location
102 current ASM45574v1 (GCF_000455745.1) Unplaced Scaffold NW_005842539.1 (2072..853349)

NW_005842539.1Genomic Context describing neighboring genes Neighboring gene GDNF family receptor alpha-1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005842539 Unplaced Scaffold Reference ASM45574v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
attractin-like protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Alligator sinensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM45574v1 Primary Assembly

Genomic

  1. NW_005842539.1 Reference ASM45574v1 Primary Assembly

    Range
    2072..853349
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006031896.2 → XP_006031958.2  attractin-like protein 1

    UniProtKB/TrEMBL
    A0A1U7SA38
    Conserved Domains (7) summary
    cd03597
    Location:476 → 602
    CLECT_attractin_like; C-type lectin-like domain (CTLD) of the type found in human and mouse attractin (AtrN) and attractin-like protein (ALP)
    cd00055
    Location:741 → 786
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    sd00038
    Location:249 → 302
    Kelch; KELCH repeat [structural motif]
    pfam01437
    Location:617 → 666
    PSI; Plexin repeat
    pfam13415
    Location:42 → 91
    Kelch_3; Galactose oxidase, central domain
    pfam13854
    Location:80 → 120
    Kelch_5; Kelch motif
    cl26061
    Location:182 → 328
    PLN02193; nitrile-specifier protein
Nucleotide Protein
Heading Accession and Version

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