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PIGV phosphatidylinositol glycan anchor biosynthesis class V [ Alligator sinensis (Chinese alligator) ]

Gene ID: 102373207, updated on 10-Mar-2024

Summary

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Gene symbol
PIGV
Gene description
phosphatidylinositol glycan anchor biosynthesis class V
Gene type
protein coding
RefSeq status
MODEL
Organism
Alligator sinensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
Orthologs
human mouse all
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Genomic context

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See PIGV in Genome Data Viewer
Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
102 current ASM45574v1 (GCF_000455745.1) Unplaced Scaffold NW_005841927.1 (674125..683790, complement)

NW_005841927.1Genomic Context describing neighboring genes Neighboring gene zinc finger DHHC-type palmitoyltransferase 18 Neighboring gene stratifin Neighboring gene AT-rich interaction domain 1A Neighboring gene uncharacterized LOC102374215

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005841927 Unplaced Scaffold Reference ASM45574v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-1,6-mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables glycolipid mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in GPI anchor biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of mannosyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
GPI mannosyltransferase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Alligator sinensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM45574v1 Primary Assembly

Genomic

  1. NW_005841927.1 Reference ASM45574v1 Primary Assembly

    Range
    674125..683790 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025198716.1 → XP_025054501.1  GPI mannosyltransferase 2

    UniProtKB/TrEMBL
    A0A1U7RJN6
    Conserved Domains (1) summary
    cl21590
    Location:12 → 523
    PMT_2; Dolichyl-phosphate-mannose-protein mannosyltransferase

  2. XM_006019247.3 → XP_006019309.1  GPI mannosyltransferase 2

    See identical proteins and their annotated locations for XP_006019309.1

    UniProtKB/TrEMBL
    A0A1U7RJN6
    Conserved Domains (1) summary
    cl21590
    Location:12 → 523
    PMT_2; Dolichyl-phosphate-mannose-protein mannosyltransferase

  3. XM_025198715.1 → XP_025054500.1  GPI mannosyltransferase 2

    UniProtKB/TrEMBL
    A0A1U7RJN6
    Conserved Domains (1) summary
    cl21590
    Location:12 → 523
    PMT_2; Dolichyl-phosphate-mannose-protein mannosyltransferase

  4. XM_025198714.1 → XP_025054499.1  GPI mannosyltransferase 2

    UniProtKB/TrEMBL
    A0A1U7RJN6
    Conserved Domains (1) summary
    cl21590
    Location:12 → 523
    PMT_2; Dolichyl-phosphate-mannose-protein mannosyltransferase
Nucleotide Protein
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