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SPTLC2 serine palmitoyltransferase long chain base subunit 2 [ Alligator sinensis (Chinese alligator) ]

Gene ID: 102372764, updated on 19-Jun-2024

Summary

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Gene symbol
SPTLC2
Gene description
serine palmitoyltransferase long chain base subunit 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Alligator sinensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
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Genomic context

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See SPTLC2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
102 current ASM45574v1 (GCF_000455745.1) Unplaced Scaffold NW_005842900.1 (7433..119584)

NW_005842900.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112548055 Neighboring gene isthmin 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005842900 Unplaced Scaffold Reference ASM45574v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables pyridoxal phosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables serine C-palmitoyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ceramide biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sphingosine biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of serine palmitoyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: serine palmitoyltransferase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Alligator sinensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM45574v1 Primary Assembly

Genomic

  1. NW_005842900.1 Reference ASM45574v1 Primary Assembly

    Range
    7433..119584
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006035961.3 → XP_006036023.1  LOW QUALITY PROTEIN: serine palmitoyltransferase 2

    UniProtKB/TrEMBL
    A0A1U7SE04
    Conserved Domains (2) summary
    PLN02483
    Location:2 → 439
    PLN02483; serine palmitoyltransferase
    COG0156
    Location:8 → 429
    BioF; 7-keto-8-aminopelargonate synthetase or related enzyme [Coenzyme transport and metabolism]
Nucleotide Protein
Heading Accession and Version

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