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MTMR4 myotubularin related protein 4 [ Alligator sinensis (Chinese alligator) ]

Gene ID: 102372670, updated on 10-Mar-2024

Summary

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Gene symbol
MTMR4
Gene description
myotubularin related protein 4
Gene type
protein coding
RefSeq status
MODEL
Organism
Alligator sinensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
Orthologs
human mouse all
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Genomic context

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See MTMR4 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
21
Annotation release Status Assembly Chr Location
102 current ASM45574v1 (GCF_000455745.1) Unplaced Scaffold NW_005842661.1 (39153..119253, complement)

NW_005842661.1Genomic Context describing neighboring genes Neighboring gene heat shock factor protein 5-like Neighboring gene caspase-1-like Neighboring gene abhydrolase domain containing 11

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005842661 Unplaced Scaffold Reference ASM45574v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phosphatidylinositol-3,5-bisphosphate 3-phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein phosphatase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in dephosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of autophagy IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
myotubularin-related protein 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Alligator sinensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM45574v1 Primary Assembly

Genomic

  1. NW_005842661.1 Reference ASM45574v1 Primary Assembly

    Range
    39153..119253 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025215674.1 → XP_025071459.1  myotubularin-related protein 4 isoform X2

    UniProtKB/TrEMBL
    A0A3Q0HHN4

  2. XM_006033780.3 → XP_006033842.1  myotubularin-related protein 4 isoform X1

    UniProtKB/TrEMBL
    A0A1U7S2Y9
    Conserved Domains (3) summary
    cd13342
    Location:24 → 137
    PH-GRAM_MTMR4; Myotubularian (MTM) related 4 protein (MTMR4) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain
    cd15733
    Location:1072 → 1131
    FYVE_MTMR4; FYVE domain found in myotubularin-related protein 4 (MTMR4) and similar proteins
    pfam06602
    Location:160 → 522
    Myotub-related; Myotubularin-like phosphatase domain

  3. XM_025215673.1 → XP_025071458.1  myotubularin-related protein 4 isoform X1

    UniProtKB/TrEMBL
    A0A1U7S2Y9
    Conserved Domains (3) summary
    cd13342
    Location:24 → 137
    PH-GRAM_MTMR4; Myotubularian (MTM) related 4 protein (MTMR4) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain
    cd15733
    Location:1072 → 1131
    FYVE_MTMR4; FYVE domain found in myotubularin-related protein 4 (MTMR4) and similar proteins
    pfam06602
    Location:160 → 522
    Myotub-related; Myotubularin-like phosphatase domain

  4. XM_025215675.1 → XP_025071460.1  myotubularin-related protein 4 isoform X3

    UniProtKB/TrEMBL
    A0A3Q0HLN6
Nucleotide Protein
Heading Accession and Version

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