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AGRN agrin [ Alligator sinensis (Chinese alligator) ]

Gene ID: 102372455, updated on 10-Mar-2024

Summary

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Gene symbol
AGRN
Gene description
agrin
Gene type
protein coding
RefSeq status
MODEL
Organism
Alligator sinensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
Orthologs
human mouse all
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Genomic context

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See AGRN in Genome Data Viewer
Location:
chromosome: Un
Exon count:
38
Annotation release Status Assembly Chr Location
102 current ASM45574v1 (GCF_000455745.1) Unplaced Scaffold NW_005841914.1 (770418..932328)

NW_005841914.1Genomic Context describing neighboring genes Neighboring gene hes family bHLH transcription factor 4 Neighboring gene U1 spliceosomal RNA Neighboring gene tyrosine-protein phosphatase non-receptor type 11-like Neighboring gene U1 spliceosomal RNA Neighboring gene ring finger protein 223

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005841914 Unplaced Scaffold Reference ASM45574v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables laminin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in G protein-coupled acetylcholine receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in receptor clustering IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
agrin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Alligator sinensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM45574v1 Primary Assembly

Genomic

  1. NW_005841914.1 Reference ASM45574v1 Primary Assembly

    Range
    770418..932328
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025198144.1 → XP_025053929.1  agrin

    UniProtKB/TrEMBL
    A0A3Q0G2Q1
    Conserved Domains (8) summary
    smart00280
    Location:374 → 419
    KAZAL; Kazal type serine protease inhibitors
    smart00200
    Location:1029 → 1153
    SEA; Domain found in sea urchin sperm protein, enterokinase, agrin
    cd00054
    Location:1725 → 1755
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    cd00110
    Location:1275 → 1425
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    pfam00053
    Location:676 → 727
    Laminin_EGF; Laminin EGF domain
    pfam00054
    Location:1567 → 1702
    Laminin_G_1; Laminin G domain
    pfam00008
    Location:1452 → 1483
    EGF; EGF-like domain
    pfam03146
    Location:3 → 23
    NtA; Agrin NtA domain
Nucleotide Protein
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