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HACD3 3-hydroxyacyl-CoA dehydratase 3 [ Alligator sinensis (Chinese alligator) ]

Gene ID: 102372217, updated on 10-Mar-2024

Summary

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Gene symbol
HACD3
Gene description
3-hydroxyacyl-CoA dehydratase 3
Gene type
protein coding
RefSeq status
MODEL
Organism
Alligator sinensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
Orthologs
human mouse all
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Genomic context

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See HACD3 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
102 current ASM45574v1 (GCF_000455745.1) Unplaced Scaffold NW_005841946.1 (2668356..2682214)

NW_005841946.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112549667 Neighboring gene dipeptidyl peptidase 8 Neighboring gene integrator complex subunit 14 Neighboring gene solute carrier family 24 member 1 Neighboring gene DENN domain containing 4A

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005841946 Unplaced Scaffold Reference ASM45574v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 3-hydroxyacyl-CoA dehydratase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in fatty acid elongation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sphingolipid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in very long-chain fatty acid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Alligator sinensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM45574v1 Primary Assembly

Genomic

  1. NW_005841946.1 Reference ASM45574v1 Primary Assembly

    Range
    2668356..2682214
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025199573.1 → XP_025055358.1  very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 3 isoform X3

    UniProtKB/TrEMBL
    A0A3Q0GB23
    Conserved Domains (2) summary
    pfam04387
    Location:190 → 351
    PTPLA; Protein tyrosine phosphatase-like protein, PTPLA
    cl00175
    Location:66 → 110
    alpha-crystallin-Hsps_p23-like; alpha-crystallin domain (ACD) found in alpha-crystallin-type small heat shock proteins, and a similar domain found in p23 (a cochaperone for Hsp90) and in other p23-like proteins.

  2. XM_006020086.3 → XP_006020148.1  very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 3 isoform X2

    UniProtKB/TrEMBL
    A0A1U7RTR2
    Conserved Domains (2) summary
    cd06465
    Location:10 → 117
    p23_hB-ind1_like; p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins. hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) ...
    pfam04387
    Location:197 → 356
    PTPLA; Protein tyrosine phosphatase-like protein, PTPLA

  3. XM_025199572.1 → XP_025055357.1  very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 3 isoform X1

    UniProtKB/TrEMBL
    A0A3Q0G7E1
    Conserved Domains (2) summary
    pfam04387
    Location:204 → 365
    PTPLA; Protein tyrosine phosphatase-like protein, PTPLA
    cl00175
    Location:80 → 124
    alpha-crystallin-Hsps_p23-like; alpha-crystallin domain (ACD) found in alpha-crystallin-type small heat shock proteins, and a similar domain found in p23 (a cochaperone for Hsp90) and in other p23-like proteins.
Nucleotide Protein
Heading Accession and Version

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