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MANBA mannosidase beta [ Alligator sinensis (Chinese alligator) ]

Gene ID: 102371765, updated on 10-Mar-2024

Summary

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Gene symbol
MANBA
Gene description
mannosidase beta
Gene type
protein coding
RefSeq status
MODEL
Organism
Alligator sinensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
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Genomic context

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See MANBA in Genome Data Viewer
Location:
chromosome: Un
Exon count:
17
Annotation release Status Assembly Chr Location
102 current ASM45574v1 (GCF_000455745.1) Unplaced Scaffold NW_005842659.1 (437927..529701)

NW_005842659.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102369588 Neighboring gene ubiquitin conjugating enzyme E2 D3 Neighboring gene nuclear factor kappa B subunit 1 Neighboring gene uncharacterized LOC102369759 Neighboring gene uncharacterized LOC112551913

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005842659 Unplaced Scaffold Reference ASM45574v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables beta-mannosidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in glycoprotein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-mannosidase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Alligator sinensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM45574v1 Primary Assembly

Genomic

  1. NW_005842659.1 Reference ASM45574v1 Primary Assembly

    Range
    437927..529701
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014524773.1 → XP_014380259.1  beta-mannosidase

    UniProtKB/TrEMBL
    A0A1U8DRC0
    Conserved Domains (3) summary
    COG3250
    Location:1 → 648
    LacZ; Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
    pfam02837
    Location:31 → 87
    Glyco_hydro_2_N; Glycosyl hydrolases family 2, sugar binding domain
    cl23725
    Location:294 → 412
    Glyco_hydro_1; Glycosyl hydrolase family 1
Nucleotide Protein
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