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PIGO phosphatidylinositol glycan anchor biosynthesis class O [ Alligator sinensis (Chinese alligator) ]

Gene ID: 102368703, updated on 10-Mar-2024

Summary

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Gene symbol
PIGO
Gene description
phosphatidylinositol glycan anchor biosynthesis class O
Gene type
protein coding
RefSeq status
MODEL
Organism
Alligator sinensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
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Genomic context

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See PIGO in Genome Data Viewer
Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
102 current ASM45574v1 (GCF_000455745.1) Unplaced Scaffold NW_005842197.1 (683163..697028)

NW_005842197.1Genomic Context describing neighboring genes Neighboring gene protein FAM214B-like Neighboring gene atos homolog B Neighboring gene stomatin like 2 Neighboring gene FA complementation group G Neighboring gene valosin containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005842197 Unplaced Scaffold Reference ASM45574v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannose-ethanolamine phosphotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in GPI anchor biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
GPI ethanolamine phosphate transferase 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Alligator sinensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM45574v1 Primary Assembly

Genomic

  1. NW_005842197.1 Reference ASM45574v1 Primary Assembly

    Range
    683163..697028
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014521263.2 → XP_014376749.1  GPI ethanolamine phosphate transferase 3

    UniProtKB/TrEMBL
    A0A1U8DG97
    Conserved Domains (2) summary
    COG1524
    Location:15 → 196
    Npp1; Predicted pyrophosphatase or phosphodiesterase, AlkP superfamily [General function prediction only]
    cd16023
    Location:3 → 240
    GPI_EPT_3; GPI ethanolamine phosphate transferase 3, PIG-O
Nucleotide Protein
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