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ERLEC1 endoplasmic reticulum lectin 1 [ Latimeria chalumnae (coelacanth) ]

Gene ID: 102367252, updated on 10-Oct-2024

Summary

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Gene symbol
ERLEC1
Gene description
endoplasmic reticulum lectin 1
See related
Ensembl:ENSLACG00000006940
Gene type
protein coding
RefSeq status
MODEL
Organism
Latimeria chalumnae
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Coelacanthiformes; Coelacanthidae; Latimeria
Orthologs
human zebrafish all
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Genomic context

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See ERLEC1 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2024_04 current fLatCha1.pri (GCF_037176945.1) 3 NC_088141.1 (47801873..47831096)
101 previous assembly LatCha1 (GCF_000225785.1) Unplaced Scaffold NW_005819994.1 (246935..277487, complement)

Chromosome 3 - NC_088141.1Genomic Context describing neighboring genes Neighboring gene ankyrin repeat and SOCS box containing 3 Neighboring gene ChaC, cation transport regulator homolog 2 (E. coli) Neighboring gene proteasome activator complex subunit 4 Neighboring gene G protein-coupled receptor 75

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in endoplasmic reticulum unfolded protein response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in retrograde protein transport, ER to cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum lumen IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
endoplasmic reticulum lectin 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_037176945.1-RS_2024_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fLatCha1.pri

Genomic

  1. NC_088141.1 Reference fLatCha1.pri

    Range
    47801873..47831096
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006003953.3 → XP_006004015.1  endoplasmic reticulum lectin 1 isoform X2

    UniProtKB/TrEMBL
    H3ADW6
    Conserved Domains (2) summary
    pfam07915
    Location:106 → 197
    PRKCSH; Glucosidase II beta subunit-like protein
    cl06793
    Location:392 → 445
    PRKCSH; Glucosidase II beta subunit-like protein

  2. XM_006003951.3 → XP_006004013.1  endoplasmic reticulum lectin 1 isoform X1

    UniProtKB/TrEMBL
    H3ADW5, H3ADW6
    Related
    ENSLACP00000007836.1
    Conserved Domains (2) summary
    pfam07915
    Location:340 → 419
    PRKCSH; Glucosidase II beta subunit-like protein
    cl06793
    Location:412 → 465
    PRKCSH; Glucosidase II beta subunit-like protein

  3. XM_064555661.1 → XP_064411731.1  endoplasmic reticulum lectin 1 isoform X3

  4. XM_006003957.3 → XP_006004019.1  endoplasmic reticulum lectin 1 isoform X4

    Conserved Domains (2) summary
    pfam07915
    Location:247 → 326
    PRKCSH; Glucosidase II beta subunit-like protein
    cl06793
    Location:319 → 372
    PRKCSH; Glucosidase II beta subunit-like protein
Nucleotide Protein
Heading Accession and Version

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