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NDST2A N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2a [ Latimeria chalumnae (coelacanth) ]

Gene ID: 102367227, updated on 6-Jun-2024

Summary

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Gene symbol
NDST2A
Gene description
N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2a
See related
Ensembl:ENSLACG00000006124
Gene type
protein coding
RefSeq status
MODEL
Organism
Latimeria chalumnae
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Coelacanthiformes; Coelacanthidae; Latimeria
Also known as
NDST2
Orthologs
human zebrafish all
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Genomic context

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See NDST2A in Genome Data Viewer
Location:
chromosome: 8
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2024_04 current fLatCha1.pri (GCF_037176945.1) 8 NC_088146.1 (86895070..87088142)
101 previous assembly LatCha1 (GCF_000225785.1) Unplaced Scaffold NW_005819251.1 (201639..640285, complement)

Chromosome 8 - NC_088146.1Genomic Context describing neighboring genes Neighboring gene calcium/calmodulin-dependent protein kinase (CaM kinase) II gamma 2 Neighboring gene uncharacterized LOC135358781 Neighboring gene uncharacterized LOC102366956 Neighboring gene zinc finger, SWIM-type containing 8 Neighboring gene neurotrypsin Neighboring gene coiled-coil-helix-coiled-coil-helix domain containing 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables [heparan sulfate]-glucosamine N-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables deacetylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 2
Names
N-deacetylase and N-sulfotransferase 2
N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_037176945.1-RS_2024_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fLatCha1.pri

Genomic

  1. NC_088146.1 Reference fLatCha1.pri

    Range
    86895070..87088142
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014487913.2 → XP_014343399.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 2 isoform X1

    Conserved Domains (2) summary
    pfam00685
    Location:599 → 836
    Sulfotransfer_1; Sulfotransferase domain
    pfam12062
    Location:26 → 510
    HSNSD; heparan sulfate-N-deacetylase

  2. XM_064562659.1 → XP_064418729.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 2 isoform X2

    UniProtKB/TrEMBL
    H3AB78

  3. XM_005995110.3 → XP_005995172.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 2 isoform X1

    See identical proteins and their annotated locations for XP_005995172.1

    Conserved Domains (2) summary
    pfam00685
    Location:599 → 836
    Sulfotransfer_1; Sulfotransferase domain
    pfam12062
    Location:26 → 510
    HSNSD; heparan sulfate-N-deacetylase
Nucleotide Protein
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