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HSPG2 heparan sulfate proteoglycan 2 [ Latimeria chalumnae (coelacanth) ]

Gene ID: 102366028, updated on 2-May-2024

Summary

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Gene symbol
HSPG2
Gene description
heparan sulfate proteoglycan 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Latimeria chalumnae
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Coelacanthiformes; Coelacanthidae; Latimeria
Orthologs
human zebrafish all
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Genomic context

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See HSPG2 in Genome Data Viewer
Location:
chromosome: 19
Exon count:
89
Annotation release Status Assembly Chr Location
RS_2024_04 current fLatCha1.pri (GCF_037176945.1) 19 NC_088157.1 (29725520..30436349, complement)
101 previous assembly LatCha1 (GCF_000225785.1) Unplaced Scaffold NW_005820005.1 (46666..764844, complement)

Chromosome 19 - NC_088157.1Genomic Context describing neighboring genes Neighboring gene uncharacterized SI:DKEY-205H13.2 Neighboring gene ubiquitin specific peptidase 48 Neighboring gene uncharacterized LOC135360549 Neighboring gene sorcin-like Neighboring gene proteasome subunit beta type-5-like Neighboring gene p53-induced death domain protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables axon guidance receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in synapse organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in axon IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in neuronal cell body IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
basement membrane-specific heparan sulfate proteoglycan core protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_037176945.1-RS_2024_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fLatCha1.pri

Genomic

  1. NC_088157.1 Reference fLatCha1.pri

    Range
    29725520..30436349 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_064567897.1 → XP_064423967.1  basement membrane-specific heparan sulfate proteoglycan core protein isoform X6

  2. XM_064567903.1 → XP_064423973.1  basement membrane-specific heparan sulfate proteoglycan core protein isoform X12

  3. XM_064567902.1 → XP_064423972.1  basement membrane-specific heparan sulfate proteoglycan core protein isoform X11

  4. XM_064567893.1 → XP_064423963.1  basement membrane-specific heparan sulfate proteoglycan core protein isoform X2

  5. XM_064567894.1 → XP_064423964.1  basement membrane-specific heparan sulfate proteoglycan core protein isoform X3

  6. XM_064567901.1 → XP_064423971.1  basement membrane-specific heparan sulfate proteoglycan core protein isoform X10

  7. XM_064567900.1 → XP_064423970.1  basement membrane-specific heparan sulfate proteoglycan core protein isoform X9

  8. XM_064567898.1 → XP_064423968.1  basement membrane-specific heparan sulfate proteoglycan core protein isoform X7

  9. XM_064567895.1 → XP_064423965.1  basement membrane-specific heparan sulfate proteoglycan core protein isoform X4

  10. XM_064567896.1 → XP_064423966.1  basement membrane-specific heparan sulfate proteoglycan core protein isoform X5

  11. XM_064567892.1 → XP_064423962.1  basement membrane-specific heparan sulfate proteoglycan core protein isoform X1

  12. XM_064567899.1 → XP_064423969.1  basement membrane-specific heparan sulfate proteoglycan core protein isoform X8

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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