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DSE dermatan sulfate epimerase [ Latimeria chalumnae (coelacanth) ]

Gene ID: 102365874, updated on 6-Jun-2024

Summary

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Gene symbol
DSE
Gene description
dermatan sulfate epimerase
See related
Ensembl:ENSLACG00000008481
Gene type
protein coding
RefSeq status
MODEL
Organism
Latimeria chalumnae
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Coelacanthiformes; Coelacanthidae; Latimeria
Orthologs
human zebrafish all
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Genomic context

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See DSE in Genome Data Viewer
Location:
chromosome: 3
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_04 current fLatCha1.pri (GCF_037176945.1) 3 NC_088141.1 (176940360..177032468, complement)
101 previous assembly LatCha1 (GCF_000225785.1) Unplaced Scaffold NW_005820947.1 (345947..411763)

Chromosome 3 - NC_088141.1Genomic Context describing neighboring genes Neighboring gene trafficking protein particle complex subunit 3-like Neighboring gene calcium homeostasis modulator protein 6 Neighboring gene calcium homeostasis modulator family member 5 Neighboring gene uncharacterized LOC135355704 Neighboring gene 5'-nucleotidase domain containing 1 Neighboring gene collagen, type X, alpha 1b Neighboring gene fyn-related Src family tyrosine kinase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chondroitin-glucuronate 5-epimerase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chondroitin sulfate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in dermatan sulfate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
dermatan-sulfate epimerase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_037176945.1-RS_2024_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fLatCha1.pri

Genomic

  1. NC_088141.1 Reference fLatCha1.pri

    Range
    176940360..177032468 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_064556225.1 → XP_064412295.1  dermatan-sulfate epimerase isoform X1

    UniProtKB/TrEMBL
    H3AIZ5

  2. XM_064556226.1 → XP_064412296.1  dermatan-sulfate epimerase isoform X1

    UniProtKB/TrEMBL
    H3AIZ5

  3. XM_006009052.3 → XP_006009114.1  dermatan-sulfate epimerase isoform X2

    Conserved Domains (1) summary
    pfam04870
    Location:647 → 756
    Moulting_cycle; Moulting cycle

  4. XM_006009053.3 → XP_006009115.1  dermatan-sulfate epimerase isoform X3

    UniProtKB/TrEMBL
    H3AIZ5
    Conserved Domains (1) summary
    pfam04870
    Location:581 → 690
    Moulting_cycle; Moulting cycle
Nucleotide Protein
Heading Accession and Version

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