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SC5D sterol-C5-desaturase [ Latimeria chalumnae (coelacanth) ]

Gene ID: 102365779, updated on 2-May-2024

Summary

Gene symbol
SC5D
Gene description
sterol-C5-desaturase
See related
Ensembl:ENSLACG00000009872
Gene type
protein coding
RefSeq status
MODEL
Organism
Latimeria chalumnae
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Coelacanthiformes; Coelacanthidae; Latimeria
Orthologs
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Genomic context

See SC5D in Genome Data Viewer
Location:
chromosome: 22
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_04 current fLatCha1.pri (GCF_037176945.1) 22 NC_088160.1 (22089720..22114075)
101 previous assembly LatCha1 (GCF_000225785.1) Unplaced Scaffold NW_005819012.1 (442702..464587)

Chromosome 22 - NC_088160.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102365089 Neighboring gene POU domain class 2-associating factor 2 Neighboring gene sortilin-related receptor, L(DLR class) A repeats containing Neighboring gene uncharacterized LOC102345984

Genomic regions, transcripts, and products

General gene information

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables C-5 sterol desaturase activity IEA
Inferred from Electronic Annotation
more info
PubMed 
enables iron ion binding IEA
Inferred from Electronic Annotation
more info
PubMed 
Process Evidence Code Pubs
involved_in cholesterol biosynthetic process via lathosterol IEA
Inferred from Electronic Annotation
more info
PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
PubMed 

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_037176945.1-RS_2024_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fLatCha1.pri

Genomic

  1. NC_088160.1 Reference fLatCha1.pri

    Range
    22089720..22114075
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005986120.3XP_005986182.1  lathosterol oxidase

    See identical proteins and their annotated locations for XP_005986182.1

    UniProtKB/TrEMBL
    H3ANJ8
    Related
    ENSLACP00000023503.1
    Conserved Domains (2) summary
    COG3000
    Location:22257
    ERG3; Sterol desaturase/sphingolipid hydroxylase, fatty acid hydroxylase superfamily [Lipid transport and metabolism]
    pfam04116
    Location:123253
    FA_hydroxylase; Fatty acid hydroxylase superfamily