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CTBS chitobiase, di-N-acetyl- [ Latimeria chalumnae (coelacanth) ]

Gene ID: 102365734, updated on 2-May-2024

Summary

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Gene symbol
CTBS
Gene description
chitobiase, di-N-acetyl-
See related
Ensembl:ENSLACG00000014703
Gene type
protein coding
RefSeq status
MODEL
Organism
Latimeria chalumnae
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Coelacanthiformes; Coelacanthidae; Latimeria
Orthologs
human zebrafish all
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Genomic context

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See CTBS in Genome Data Viewer
Location:
chromosome: 6
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_04 current fLatCha1.pri (GCF_037176945.1) 6 NC_088144.1 (72996973..73025000)
101 previous assembly LatCha1 (GCF_000225785.1) Unplaced Scaffold NW_005819194.1 (1085195..1112787, complement)

Chromosome 6 - NC_088144.1Genomic Context describing neighboring genes Neighboring gene vitellogenin-like Neighboring gene vitellogenin-like Neighboring gene uncharacterized LOC135357538 Neighboring gene spermatogenesis associated 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chitin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in oligosaccharide catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
di-N-acetylchitobiase
Names
chitobiase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_037176945.1-RS_2024_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fLatCha1.pri

Genomic

  1. NC_088144.1 Reference fLatCha1.pri

    Range
    72996973..73025000
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014487150.2 → XP_014342636.1  di-N-acetylchitobiase isoform X2

    UniProtKB/TrEMBL
    H3B472

  2. XM_005993867.3 → XP_005993929.1  di-N-acetylchitobiase isoform X1

    UniProtKB/TrEMBL
    H3B472, M3XI66
    Related
    ENSLACP00000022422.1
    Conserved Domains (2) summary
    cd02875
    Location:7 → 360
    GH18_chitobiase; Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. ...
    smart00636
    Location:97 → 336
    Glyco_18; Glyco_18 domain
Nucleotide Protein
Heading Accession and Version

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