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CLK2A CDC-like kinase 2a [ Latimeria chalumnae (coelacanth) ]

Gene ID: 102365590, updated on 12-Sep-2024

Summary

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Gene symbol
CLK2A
Gene description
CDC-like kinase 2a
See related
Ensembl:ENSLACG00000012839
Gene type
protein coding
RefSeq status
MODEL
Organism
Latimeria chalumnae
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Coelacanthiformes; Coelacanthidae; Latimeria
Also known as
CLK2
Orthologs
human zebrafish all
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Genomic context

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See CLK2A in Genome Data Viewer
Location:
chromosome: 6
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_04 current fLatCha1.pri (GCF_037176945.1) 6 NC_088144.1 (119550841..119590480, complement)
101 previous assembly LatCha1 (GCF_000225785.1) Unplaced Scaffold NW_005819728.1 (771326..808968)

Chromosome 6 - NC_088144.1Genomic Context describing neighboring genes Neighboring gene GATA zinc finger domain containing 2B Neighboring gene cytochrome P450 11B, mitochondrial-like Neighboring gene complexin-4-like Neighboring gene uncharacterized LOC106704556 Neighboring gene potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein serine/threonine kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein tyrosine kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in peptidyl-tyrosine phosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of RNA splicing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
dual specificity protein kinase CLK2
Names
CDC like kinase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_037176945.1-RS_2024_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fLatCha1.pri

Genomic

  1. NC_088144.1 Reference fLatCha1.pri

    Range
    119550841..119590480 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006001643.3 → XP_006001705.1  dual specificity protein kinase CLK2

    UniProtKB/TrEMBL
    H3AY68
    Related
    ENSLACP00000014589.1
    Conserved Domains (3) summary
    smart00220
    Location:168 → 484
    S_TKc; Serine/Threonine protein kinases, catalytic domain
    pfam08648
    Location:54 → 110
    DUF1777; Protein of unknown function (DUF1777)
    cl21453
    Location:155 → 484
    PKc_like; Protein Kinases, catalytic domain
Nucleotide Protein
Heading Accession and Version

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