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LOC102365272 polypeptide N-acetylgalactosaminyltransferase 6 [ Latimeria chalumnae (coelacanth) ]

Gene ID: 102365272, updated on 2-May-2024

Summary

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Gene symbol
LOC102365272
Gene description
polypeptide N-acetylgalactosaminyltransferase 6
See related
Ensembl:ENSLACG00000018944
Gene type
protein coding
RefSeq status
MODEL
Organism
Latimeria chalumnae
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Coelacanthiformes; Coelacanthidae; Latimeria
Also known as
GALNT6
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Genomic context

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See LOC102365272 in Genome Data Viewer
Location:
chromosome: 28
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_04 current fLatCha1.pri (GCF_037176945.1) 28 NC_088166.1 (2994758..3018820, complement)
101 previous assembly LatCha1 (GCF_000225785.1) Unplaced Scaffold NW_005819012.1 (5555915..5580305)

Chromosome 28 - NC_088166.1Genomic Context describing neighboring genes Neighboring gene chymotrypsin like elastase 1 Neighboring gene nck-associated protein 5-like Neighboring gene uncharacterized LOC102352441 Neighboring gene electroneutral sodium bicarbonate exchanger 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables polypeptide N-acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polypeptide N-acetylgalactosaminyltransferase 6
Names
UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 6 (GalNAc-T6)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_037176945.1-RS_2024_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fLatCha1.pri

Genomic

  1. NC_088166.1 Reference fLatCha1.pri

    Range
    2994758..3018820 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005986213.3 → XP_005986275.1  polypeptide N-acetylgalactosaminyltransferase 6

    UniProtKB/TrEMBL
    H3BI41
    Related
    ENSLACP00000021562.1
    Conserved Domains (3) summary
    cd02510
    Location:180 → 485
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    cd00161
    Location:499 → 622
    RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...
    pfam00652
    Location:498 → 620
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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