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CHPFA chondroitin polymerizing factor a [ Latimeria chalumnae (coelacanth) ]

Gene ID: 102363926, updated on 26-Apr-2024

Summary

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Gene symbol
CHPFA
Gene description
chondroitin polymerizing factor a
See related
Ensembl:ENSLACG00000013509
Gene type
protein coding
RefSeq status
MODEL
Organism
Latimeria chalumnae
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Coelacanthiformes; Coelacanthidae; Latimeria
Also known as
CHPF
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: 9
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_04 current fLatCha1.pri (GCF_037176945.1) 9 NC_088147.1 (80456309..80496182, complement)
101 previous assembly LatCha1 (GCF_000225785.1) Unplaced Scaffold NW_005819285.1 (868618..901880, complement)

Chromosome 9 - NC_088147.1Genomic Context describing neighboring genes Neighboring gene 5S ribosomal RNA Neighboring gene acid-sensing (proton-gated) ion channel family member 4a Neighboring gene uncharacterized LOC106703433 Neighboring gene uncharacterized LOC102345401 Neighboring gene FEV transcription factor, ETS family member

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chondroitin sulfate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi cisterna membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chondroitin sulfate synthase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_037176945.1-RS_2024_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fLatCha1.pri

Genomic

  1. NC_088147.1 Reference fLatCha1.pri

    Range
    80456309..80496182 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005995781.2 → XP_005995843.1  chondroitin sulfate synthase 2

    UniProtKB/TrEMBL
    H3B0C3
    Related
    ENSLACP00000015344.1
    Conserved Domains (2) summary
    pfam05679
    Location:281 → 783
    CHGN; Chondroitin N-acetylgalactosaminyltransferase
    cl21608
    Location:216 → 302
    Galactosyl_T; Galactosyltransferase
Nucleotide Protein
Heading Accession and Version

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