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LOC102362707 natural resistance-associated macrophage protein 1 [ Latimeria chalumnae (coelacanth) ]

Gene ID: 102362707, updated on 2-May-2024

Summary

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Gene symbol
LOC102362707
Gene description
natural resistance-associated macrophage protein 1
See related
Ensembl:ENSLACG00000007706
Gene type
protein coding
RefSeq status
MODEL
Organism
Latimeria chalumnae
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Coelacanthiformes; Coelacanthidae; Latimeria
Also known as
SLC11A1
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Genomic context

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See LOC102362707 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2024_04 current fLatCha1.pri (GCF_037176945.1) 9 NC_088147.1 (86552692..86619256)
101 previous assembly LatCha1 (GCF_000225785.1) Unplaced Scaffold NW_005820702.1 (292457..362251, complement)

Chromosome 9 - NC_088147.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102362271 Neighboring gene small nucleolar RNA SNORD89 Neighboring gene ciliogenesis associated TTC17 interacting protein Neighboring gene histone H2B-like Neighboring gene carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1 Neighboring gene transfer RNA lysine (anticodon UUU)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cadmium ion transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables iron ion transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables manganese ion transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables metal cation:proton antiporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intracellular iron ion homeostasis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in metal ion transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to lipopolysaccharide IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in phagocytic vesicle membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
natural resistance-associated macrophage protein 1
Names
solute carrier family 11 member 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_037176945.1-RS_2024_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fLatCha1.pri

Genomic

  1. NC_088147.1 Reference fLatCha1.pri

    Range
    86552692..86619256
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014495834.2 → XP_014351320.1  natural resistance-associated macrophage protein 1

    UniProtKB/TrEMBL
    H3AGE7
    Related
    ENSLACP00000008718.2
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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