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LOC102362520 carbohydrate sulfotransferase 8 [ Latimeria chalumnae (coelacanth) ]

Gene ID: 102362520, updated on 26-Apr-2024

Summary

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Gene symbol
LOC102362520
Gene description
carbohydrate sulfotransferase 8
Gene type
protein coding
RefSeq status
MODEL
Organism
Latimeria chalumnae
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Coelacanthiformes; Coelacanthidae; Latimeria
Also known as
CHST8
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Genomic context

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See LOC102362520 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_04 current fLatCha1.pri (GCF_037176945.1) 5 NC_088143.1 (43040706..43042464, complement)
101 previous assembly LatCha1 (GCF_000225785.1) Unplaced Scaffold NW_005819910.1 (383492..385249, complement)

Chromosome 5 - NC_088143.1Genomic Context describing neighboring genes Neighboring gene transcription initiation factor TFIID subunit 4-like Neighboring gene 5S ribosomal RNA Neighboring gene BTB/POZ domain-containing protein kctd15 Neighboring gene uncharacterized LOC102361718 Neighboring gene peptidase D Neighboring gene CCAAT enhancer binding protein gamma

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteoglycan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carbohydrate sulfotransferase 8
Names
carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 8

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_037176945.1-RS_2024_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fLatCha1.pri

Genomic

  1. NC_088143.1 Reference fLatCha1.pri

    Range
    43040706..43042464 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006003156.1 → XP_006003218.1  carbohydrate sulfotransferase 8

    UniProtKB/TrEMBL
    H3AKJ6
    Conserved Domains (1) summary
    pfam03567
    Location:153 → 382
    Sulfotransfer_2; Sulfotransferase family
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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